PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07948_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 999aa    MW: 113318 Da    PI: 10.0593
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07948_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind239.22.9e-73809999111301
                   GAGA_bind 111 lqqlsepqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaek 191
                                 +  ++ep l  s++   +  +e  +++ + ++++++ ++k++ k++++  pk+   k++ kk++ +kk + ++   +++k+ek
  Cotton_A_07948_BGI-A2_v1.0 809 TGIHHEPGLVVSPIRtiAATTESGNNNDLGTKTTKVGKQKSSVKGSNQIAPKVLGPKQPMKKPSLPKKGKGASI--PETKREK 889
                                 44455555555555533445566677778888889999999999999999**9999999998877755554444..79***** PP

                   GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                                 k+ +++l+g ++D s++P P+CsCtG+ r+CYkWG+ GWqS+CCt++iS  PLP+s++r+gaR+agrKmS+ga+ klL +Laa
  Cotton_A_07948_BGI-A2_v1.0 890 KNPNINLDGTKFDFSGVPSPICSCTGVARVCYKWGASGWQSSCCTINISECPLPMSPTRPGARVAGRKMSNGAYFKLLLRLAA 972
                                 *********************************************************************************** PP

                   GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                                 eGydls+pvDLkdhWA+HGtnkfvti+
  Cotton_A_07948_BGI-A2_v1.0 973 EGYDLSHPVDLKDHWARHGTNKFVTIK 999
                                 **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139679.6E-457178IPR032880Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain
PfamPF147031.4E-45199361IPR02781510TM putative phosphate transporter, cytosolic domain
PfamPF027141.8E-81372644IPR003864Calcium-dependent channel, 7TM region, putative phosphate
SMARTSM012261.8E-77737999IPR010409GAGA-binding transcriptional activator
PfamPF062178.3E-65843999IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MATLSDIGVS ALINILSAFA FLLAFALLRI QPVNDRVYFP KWYINGERAS PRRGGNFVAK  60
FVNLDFKTYL TFLNWMPQAL KMSETQLINH AGLDSAVFLR IYILGLKIFV PIAVVALLIL  120
IPVNVSSGTL FFLRKELVVS DIDKLSISNV PPKSIRFFVH IGLEYLFTIW ICYMLYKEYD  180
NVATMRLHFL ASQRRRAEQF TVAVRNVPQI PGHSIAESLD HFFKTNHPDT YLCHQAVYNA  240
NKFASLVRKR DRLQNWLDYN QLKFERNPEK RPTKNIGFLG LWGERVDSID FYKQQIKEFD  300
KRMELERQKI LKDSKSILPV AFVSFKSRWG AAVCAQTQQS KNPTLWLTDW APEPRDVYWR  360
NLAIPFVSLT IRKLIISLSV FALVFFYMIP IAFVQSLANL EGLERVAPFL RPVIELNFIK  420
SFLQGFLPGL ALKIFLYVLP TILMIMSKIE GHIAISTLER RASAKYYYFM LVNVFLGSIV  480
TGTAFQQLHS FLHQPPTQIP RTIGVSIPMK ATFFITYIMV DGWAGIAGEI LRLKPLVIFH  540
LKNMFLVKTE RDREMAMDPG SVDYPETLPS LQLYFLLGIV YAVVTPILLP FILVFFAFAY  600
LVYRHQIINV YNPQYESGAA FWPHVHSRII ASLLISQLLL MGLLSTKEAA NSTPLLVILP  660
ILTLSFHKYC KSRFEPAFRK HPLEEAMAKD LMDQTTESDI NLKAFLADAY LHPIFRSFEE  720
EELVEIRVDK IFQPETCLDL PSTRSYQASK SLWSIYGIAR AQVIAMKMRS YSDKNVMPET  780
EIGSTGSPFS WLYHYNPTSK PGFSSLQRTG IHHEPGLVVS PIRTIAATTE SGNNNDLGTK  840
TTKVGKQKSS VKGSNQIAPK VLGPKQPMKK PSLPKKGKGA SIPETKREKK NPNINLDGTK  900
FDFSGVPSPI CSCTGVARVC YKWGASGWQS SCCTINISEC PLPMSPTRPG ARVAGRKMSN  960
GAYFKLLLRL AAEGYDLSHP VDLKDHWARH GTNKFVTIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6oce_A0.017521757stress-gated cation channel 1.2
6oce_B0.017521757stress-gated cation channel 1.2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as an osmosensitive calcium-permeable cation channel. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637688.10.0PREDICTED: CSC1-like protein At1g32090
SwissprotQ9FVQ50.0CSCL1_ARATH; CSC1-like protein At1g32090
TrEMBLA0A0B0PQY00.0A0A0B0PQY0_GOSAR; Putative membrane C2G11.09
TrEMBLA0A2P5VR210.0A0A2P5VR21_GOSBA; Uncharacterized protein
STRINGGorai.008G222200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.48e-68basic pentacysteine 7
Publications ? help Back to Top
  1. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  2. Parsons HT, et al.
    Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis.
    Plant Physiol., 2012. 159(1): p. 12-26
    [PMID:22430844]
  3. Hou C, et al.
    DUF221 proteins are a family of osmosensitive calcium-permeable cation channels conserved across eukaryotes.
    Cell Res., 2014. 24(5): p. 632-5
    [PMID:24503647]