PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07916_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 345aa    MW: 37738.8 Da    PI: 7.2698
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07916_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-0782106126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 +kt+lC  f++ GtC++  +C+FaH+
  Cotton_A_07916_BGI-A2_v1.0  82 FKTKLCGKFRA-GTCPFIKNCNFAHS 106
                                 69*********.*************8 PP
2zf-CCCH18.63.2e-06156181126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 yk + C+ f+    C+yGd+C+F H+
  Cotton_A_07916_BGI-A2_v1.0 156 YKGRHCKKFYTEEGCPYGDNCTFLHD 181
                                 78888********************7 PP
3zf-CCCH437.4e-14227252126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 +kt++C+ +  tG+C++G++C+FaHg
  Cotton_A_07916_BGI-A2_v1.0 227 WKTRICNKWELTGYCPFGNKCHFAHG 252
                                 8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.0E-1479114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-779112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.03781108IPR000571Zinc finger, CCCH-type
SMARTSM003560.00281107IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-582106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-9153183IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-7154183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23155183IPR000571Zinc finger, CCCH-type
SMARTSM003560.058155182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-16221256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-10223257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525226254IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-9226253IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-11227252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDYSRENVVH VIPNSIDPSV WATEEDYRAW NNEETFNDAP SNFSYDQRQP QSRSNSDMPP  60
NKKSRNSQDL SSRSKAIGKM FFKTKLCGKF RAGTCPFIKN CNFAHSIEEL RRPPPNWQEI  120
VAAHEEEKGI LAEPREEFHI PSLGSNSFSG ETQRSYKGRH CKKFYTEEGC PYGDNCTFLH  180
DEQSKNRESV AISLGPGGYG GGGGGGGGGG AASGGCGSGS NIKPSNWKTR ICNKWELTGY  240
CPFGNKCHFA HGLAELHRHG GALGDTEAKD SFVAPFDSKQ AGGAPLKTPA DTMAASIPSV  300
PLSDLGVPSQ RTSIVLQKPG QTTPHNWKGP DKISRIYGDW IDDFE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431650.0AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636583.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-113C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1U8NCF60.0A0A1U8NCF6_GOSHI; zinc finger CCCH domain-containing protein 12-like
STRINGGorai.008G225600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-116C3H family protein