PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07851_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 164aa    MW: 19027.1 Da    PI: 6.6751
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07851_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.37.9e-143490561
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                                ++ +rk++NRe+ArrsR RK++ ++eL   v++L++eN +  + ++  + ++ + ++
  Cotton_A_07851_BGI-A2_v1.0 34 RKRKRKESNRESARRSRMRKQQHLDELVAQVAQLSKENNQILNSINFTTHHYLNIQA 90
                                6789**********************************9998888877776666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-122678No hitNo description
SMARTSM003383.5E-193094IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.993295IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-123487No hitNo description
PfamPF001701.9E-103484IPR004827Basic-leucine zipper domain
CDDcd147025.49E-193585No hitNo description
PROSITE patternPS0003603752IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASSSGNSNS SSSSQLQNSG SEEDLHQQNM MDQRKRKRKE SNRESARRSR MRKQQHLDEL  60
VAQVAQLSKE NNQILNSINF TTHHYLNIQA ENSVLRAQMM ELSQRLDYLN QILSYLNTMS  120
ASELVYETDQ CFETSTCDHG FTKPFNLPYL NQPIMASPDM FQYY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338RKRKRK
23339RKRKRKE
34653RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608543.11e-119PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L53e-53BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2P5WCF41e-117A0A2P5WCF4_GOSBA; Uncharacterized protein
STRINGGorai.009G199300.11e-112(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-30basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]