PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07811_BGI-A2_v1.0
Common NameF383_27140
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 695aa    MW: 75188.3 Da    PI: 6.7398
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07811_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07276296526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C++f++ G C++Gd C +aHg
  Cotton_A_07811_BGI-A2_v1.0 276 PCPDFRK-GACRRGDMCEYAHG 296
                                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.3E-199153IPR020683Ankyrin repeat-containing domain
PfamPF127969.2E-1153126IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-1855163IPR020683Ankyrin repeat-containing domain
CDDcd002042.41E-1656147No hitNo description
SMARTSM002485.3E-45787IPR002110Ankyrin repeat
PROSITE profilePS5029719.65157150IPR020683Ankyrin repeat-containing domain
PRINTSPR014155.0E-55873IPR002110Ankyrin repeat
PROSITE profilePS5008812.07592127IPR002110Ankyrin repeat
SMARTSM002485.3E-492124IPR002110Ankyrin repeat
PRINTSPR014155.0E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035665306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MNHLTLETED TFASLLELAA NNDVEGFKRS IQRDPSGVDE VGLWYGRPKG SKQMVNNERT  60
PLMVAATYGS IDVIKLILSS SDADINRVCG HDKSTALHCA ASGGASNAVD VVKLLLAAGA  120
DANLVDANGH LPIDVIVVPP KLQLVKLTLE QLLATESSVL EQNLRVSTAV TNSGSNPPSP  180
SRENGSPTSG LGSPQKLKST NAPFSSTSEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCAR RVCFFAHTAE ELRPLYVSTG SAVLSPRSST SGATAMDFAA  360
ALSLLPGSPS SVSVMSPSPF TPPMSPSANG MSHCNVAWPQ PNVPALHLPG SNLQSSRLRS  420
SLNARDIPTE DFNLLPDFDV QQQQLINELS SLSQPSMSSN SLNRSGRLKT LTPSNLDDLF  480
SAENSSLQYS DQALAAAVYS PTHKSAVLNQ FQQQQSMLSP INTNFSPKNI EHPLLQASLS  540
GRMSPRNVEP ISPMSSRVSM LVQREKQQQF RSLSSRELGS GSSATVGSPV NSWWGSSNGK  600
PDWAVDADGS GKLRRSSSFE LGNGDEPDLS WVQSLVKESP TEVKEKTGVP VSGVTVNAST  660
GLGSSMNSRI DPVDTAVLGA WIEQMKLDEL VAQQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611418.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0B0MST40.0A0A0B0MST4_GOSAR; Uncharacterized protein
STRINGGorai.006G138100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]