PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_07740_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24975.6 Da PI: 8.1532 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.6 | 7.7e-37 | 9 | 98 | 1 | 89 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lq Cotton_A_07740_BGI-A2_v1.0 9 PCGACKFLRRKCVKGCIFAPYFDSDQgMAHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQ 93 7***********************9988********************************************************* PP DUF260 85 qqleq 89 qq+++ Cotton_A_07740_BGI-A2_v1.0 94 QQVCS 98 **996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.742 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-36 | 9 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSGNNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGMAHFA AVHKVYGASN ASKMLQRIPV 60 HKRLDAVVTL CYEALARVRD PVYGCVGHLF TLQQQVCSPL TFILDFLSFF FVLELNREKS 120 SFCNVKQLRY DICVVNLQAE LAYTQARLST LQRHPPSSSE IGSELMSSSN MSTHFDPPQQ 180 TSVGLTSFPN SFDQVAENEE LQVLTREFVS RYLPGVRFHP STST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 5 | 96 | 7 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 5 | 96 | 7 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016710129.1 | 1e-130 | PREDICTED: LOB domain-containing protein 19-like | ||||
Refseq | XP_017614887.1 | 1e-130 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 4e-59 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A0B0MXZ8 | 1e-128 | A0A0B0MXZ8_GOSAR; LOB domain-containing 19-like protein | ||||
TrEMBL | A0A1U8LAF3 | 1e-128 | A0A1U8LAF3_GOSHI; LOB domain-containing protein 19-like | ||||
TrEMBL | A0A2P5XPI9 | 1e-128 | A0A2P5XPI9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G091600.1 | 1e-126 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 6e-60 | LOB domain-containing protein 19 |