PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07539_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 326aa    MW: 36225.7 Da    PI: 6.1664
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07539_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.6e-36271182102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++
  Cotton_A_07539_BGI-A2_v1.0  27 FLTKTYQLVDDHTIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSND 100
                                 9*****************************************************************99.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                 +F++g+k+ll++i+r+k 
  Cotton_A_07539_BGI-A2_v1.0 101 YFRRGEKRLLCEIQRRKL 118
                                 ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3717111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5623116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.8E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAPPPVEQNG DATTGTAESQ RSIPTPFLTK TYQLVDDHTI DDVISWNDDG STFIVWNPTV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND YFRRGEKRLL CEIQRRKLSS  120
PTAAAVTVAP VTVAAIPMAK PIISPSNSGD EQSPVISSAS SPSRLNQAGT VMAELMKENE  180
KLRKENVQLN KQLSEMKSLC NNIFSLMSNY ASSQSENISP VHKPLDFLPA KRLSCGESVE  240
EETSPRLFGV PIGGAAKRAR EEGEGVATEA ATAADETQLQ LQQPGGSEII KLEPLDCQNR  300
GRDDDRGIQD APWLRQFHRA NQRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-222711629129Heat shock factor protein 1
5d5v_B2e-222711629129Heat shock factor protein 1
5d5v_D2e-222711629129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486230.0KJ748623.1 Gossypium hirsutum HSF20 (HSF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608576.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-105HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1U8LAU50.0A0A1U8LAU5_GOSHI; heat stress transcription factor B-2a-like isoform X1
STRINGGorai.007G010900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-98heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]