PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07486_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 675aa MW: 78060.9 Da PI: 8.0595

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07486_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	4.1e-21	68	151	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++Yn YAke+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+++++ ++++w+v ++ + Cotton_A_07486_BGI-A2_v1.0 68 NYYNCYAKEAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRVVDSKRWRVLEVTH 145 69***************************************9988.....99************************* PP FAR1 84 eHnHel 89 eHnH l Cotton_A_07486_BGI-A2_v1.0 146 EHNHLL 151 **87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-18	68	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.6E-28	270	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	557	593	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-4	565	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	568	595	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MEVEEEKEAF PSNNDCLAEA KCDGQILKEI NSEPTESFDV QNSLPEGKKE FVAPAVGMEF 60 ESYDDAYNYY NCYAKEAGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKET 120 RTGCPAMIRM RVVDSKRWRV LEVTHEHNHL LGAKIYKSVK KMGSGARSKL QSSSDAEVRT 180 IKLYRALVID AGGNGTLNCN ATGGRKFSDH PHQLNLRKGD SQAIYNYLCR LQLTNPNFFY 240 LMDFTDEGCL RNVFWVDSRC RASCGYFGDV IYVDNTCMSN KYETPLVALV GVNHHGQTVL 300 LGCGLLAGET AETYTWLFKA WLTCVSGQYP QTIITDRCKA LQTAIAEVFP KSNHRFSLSL 360 IMKRVPEKLG GLRNYDAIRK TFVKAVFETL KVIEFEAAWG FMIQHFGVTD HEWLRSLYED 420 RARWAPVYLK DTFFAGLSAS RPGENLSPFF DKYVHKQTPL KEFLDKYELA LQKKHKEETL 480 ADIESRNSSP ELRTRCSFEL QLSKLYTREI FKRFQFEVEE MYSCFSTTQL HVDGPIIIFL 540 VKERVLAEGN RREIRDYEVL YNRSASEVRC ICSCFNFYGY LCRHALCVLN FNGVEEVPSK 600 YILSRWKKDY KRFYVPDQGS YNVDSIDHMQ WFNQLYRSAL QVVEEGAISL DHYKVALQAF 660 EDSLNRVHVV EEKQD

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MEVEEEKEAF PSNNDCLAEA KCDGQILKEI NSEPTESFDV QNSLPEGKKE FVAPAVGMEF  60
ESYDDAYNYY NCYAKEAGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKET  120
RTGCPAMIRM RVVDSKRWRV LEVTHEHNHL LGAKIYKSVK KMGSGARSKL QSSSDAEVRT  180
IKLYRALVID AGGNGTLNCN ATGGRKFSDH PHQLNLRKGD SQAIYNYLCR LQLTNPNFFY  240
LMDFTDEGCL RNVFWVDSRC RASCGYFGDV IYVDNTCMSN KYETPLVALV GVNHHGQTVL  300
LGCGLLAGET AETYTWLFKA WLTCVSGQYP QTIITDRCKA LQTAIAEVFP KSNHRFSLSL  360
IMKRVPEKLG GLRNYDAIRK TFVKAVFETL KVIEFEAAWG FMIQHFGVTD HEWLRSLYED  420
RARWAPVYLK DTFFAGLSAS RPGENLSPFF DKYVHKQTPL KEFLDKYELA LQKKHKEETL  480
ADIESRNSSP ELRTRCSFEL QLSKLYTREI FKRFQFEVEE MYSCFSTTQL HVDGPIIIFL  540
VKERVLAEGN RREIRDYEVL YNRSASEVRC ICSCFNFYGY LCRHALCVLN FNGVEEVPSK  600
YILSRWKKDY KRFYVPDQGS YNVDSIDHMQ WFNQLYRSAL QVVEEGAISL DHYKVALQAF  660
EDSLNRVHVV EEKQD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647011.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1U8IJ30	0.0	A0A1U8IJ30_GOSHI; protein FAR1-RELATED SEQUENCE 6-like
STRING	Gorai.011G085000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]