PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_06828_BGI-A2_v1.0

Common Name

F383_12616

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 740aa MW: 80780.6 Da PI: 6.6007

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06828_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	323	343	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cotton_A_06828_BGI-A2_v1.0 323 PCPDFRK-GACRRGDMCEYAHG 343 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00204	2.26E-15	49	178	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.4E-18	50	200	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-16	50	199	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4000	52	82	IPR002110	Ankyrin repeat
Pfam	PF12796	3.2E-10	96	167	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	19.678	99	201	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.003	99	131	IPR002110	Ankyrin repeat
SMART	SM00248	0.0026	99	128	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.995	133	168	IPR002110	Ankyrin repeat
SMART	SM00248	0.0086	133	165	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	318	344	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	322	345	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.6E-5	323	343	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	323	345	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	351	381	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MWFNDLSNFI LEFDMIGYLF FVHEFAANRS MCVGPEHSKS GDMNHLTVKT EDSFSSLLEL 60 ASNNDVEGIK QSIEKDVSSI DEVGLWYCRE KGSNRIVAKH RTPLMVAATY GSVDVVKLIL 120 THSEAVNLSC GTDKSTALHC AASSGSLHAI DVANLLLSAG ADTNSSDANG CRPADVVVVH 180 PKLQSMRAVM EELLSGHVSD DSFGKQNLRI SIDNPTSGLP PLSSSPENRS SPSPSHLASS 240 PTASKFVDIP VNSTTERKEY PVDPSLPDIK NSVYAADEFR MFSFKIRPCS RAYSHDWTEC 300 PFVHPGENAR RRDPRKYHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRMCK 360 DGTSCDRRVC FFAHTAEELR PLYVSTGSAV PSPRSSASTA SVMDMAAVMS LLPGSPSSVS 420 ALSPSPFNQP MSPSANGLSH SSAAWPQPNV PTLHLPGSSF QSSRLRSSLS ARDIPREGFD 480 MWPDFDAHEQ ILNDLTCVSQ CHNSPVSVSR SCRSKTLTPS NLEELFSAEI SSSPIYTDQS 540 AASAIFSPTH KSAVLNQFQQ QQSKLSPINT SVFAPRNVEH PLLQASFGVG SPGRMSPRSN 600 EPISPMAARL SAHVQLEKQR QQQLSCLSSR ELGSPVNSPW SKWGSPNGKL NWSVSADELG 660 QLRKSSYELL NSSEGPDLSW VQSLVKESPP EMMKEKLVAP APHGASSGNI SNDSNSQINS 720 VDHSVLGAWI EQMQLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MWFNDLSNFI LEFDMIGYLF FVHEFAANRS MCVGPEHSKS GDMNHLTVKT EDSFSSLLEL  60
ASNNDVEGIK QSIEKDVSSI DEVGLWYCRE KGSNRIVAKH RTPLMVAATY GSVDVVKLIL  120
THSEAVNLSC GTDKSTALHC AASSGSLHAI DVANLLLSAG ADTNSSDANG CRPADVVVVH  180
PKLQSMRAVM EELLSGHVSD DSFGKQNLRI SIDNPTSGLP PLSSSPENRS SPSPSHLASS  240
PTASKFVDIP VNSTTERKEY PVDPSLPDIK NSVYAADEFR MFSFKIRPCS RAYSHDWTEC  300
PFVHPGENAR RRDPRKYHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRMCK  360
DGTSCDRRVC FFAHTAEELR PLYVSTGSAV PSPRSSASTA SVMDMAAVMS LLPGSPSSVS  420
ALSPSPFNQP MSPSANGLSH SSAAWPQPNV PTLHLPGSSF QSSRLRSSLS ARDIPREGFD  480
MWPDFDAHEQ ILNDLTCVSQ CHNSPVSVSR SCRSKTLTPS NLEELFSAEI SSSPIYTDQS  540
AASAIFSPTH KSAVLNQFQQ QQSKLSPINT SVFAPRNVEH PLLQASFGVG SPGRMSPRSN  600
EPISPMAARL SAHVQLEKQR QQQLSCLSSR ELGSPVNSPW SKWGSPNGKL NWSVSADELG  660
QLRKSSYELL NSSEGPDLSW VQSLVKESPP EMMKEKLVAP APHGASSGNI SNDSNSQINS  720
VDHSVLGAWI EQMQLDQLVV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627000.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0B0PS59	0.0	A0A0B0PS59_GOSAR; Uncharacterized protein
STRING	Gorai.004G037500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]