PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06622_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28314.8 Da    PI: 8.4253
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06622_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.6e-28959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                k+ien   rqvtfskRrng+lKKA+ELS+LCdaev viifsstgk+y +ss
  Cotton_A_06622_BGI-A2_v1.0  9 KKIENLNSRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKVYQWSS 59
                                68***********************************************96 PP
2K-box54.16.6e-19721685100
                       K-box   5 sgksleeakaeslqq.elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                                 +    ++++ae+lq  e++ +k+e+  L +   +l G++L++Ls+keL+qLe+qL++++ +++++K+++l+eq+++++ +e++
  Cotton_A_06622_BGI-A2_v1.0  72 QEHPSDKQEAEKLQGiEVNTMKEEYLRLHTAYMRLNGKELDDLSFKELKQLENQLNEGIASVKQQKEQILMEQLKRSRLQEQK 154
                                 33346677777777449****************************************************************** PP

                       K-box  87 lqeenkaLrkklee 100
                                 +  en++Lrk++ee
  Cotton_A_06622_BGI-A2_v1.0 155 TTMENEDLRKQVEE 168
                                 ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-29275IPR002100Transcription factor, MADS-box
CDDcd002654.02E-36271No hitNo description
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.45582172IPR002487Transcription factor, K-box
PfamPF014862.7E-1385166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KAKELSILCD AEVGVIIFSS TGKVYQWSST  60
RYNKGMEEDH SQEHPSDKQE AEKLQGIEVN TMKEEYLRLH TAYMRLNGKE LDDLSFKELK  120
QLENQLNEGI ASVKQQKEQI LMEQLKRSRL QEQKTTMENE DLRKQVEELR QKRSSKILEL  180
NPLLERRLDH SPNNSKADYN NSASDDDNHL SDTSLHLGLT SKVGRKRKAT EIEPTTNDSG  240
SQVASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19181187MEF2C
5f28_B2e-19181187MEF2C
5f28_C2e-19181187MEF2C
5f28_D2e-19181187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5853712e-31JX585371.1 Gossypium hirsutum clone NBRI_GE18912 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434983.11e-155PREDICTED: agamous-like MADS-box protein AGL18 isoform X1
SwissprotQ9M2K85e-65AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A0D2SQ801e-154A0A0D2SQ80_GOSRA; Uncharacterized protein
STRINGGorai.007G360800.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-66AGAMOUS-like 18