PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06354_BGI-A2_v1.0
Common NameF383_08027
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 291aa    MW: 32209.3 Da    PI: 8.1003
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06354_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-19134188256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ +++keq  +Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Cotton_A_06354_BGI-A2_v1.0 134 RKKLRLSKEQSMVLEETFKEHSTLNPKQKLALAKQLNLKPRQVEVWFQNRRARTK 188
                                 788899***********************************************98 PP
2HD-ZIP_I/II127.27.2e-41134223191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke
  Cotton_A_06354_BGI-A2_v1.0 134 RKKLRLSKEQSMVLEETFKEHSTLNPKQKLALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKE 216
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                 v+eLr +l
  Cotton_A_06354_BGI-A2_v1.0 217 VQELR-AL 223
                                 ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.2E-291101IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.608.6E-19118184IPR009057Homeodomain-like
SuperFamilySSF466895.13E-19121191IPR009057Homeodomain-like
PROSITE profilePS5007117.427130190IPR001356Homeobox domain
SMARTSM003897.3E-16132194IPR001356Homeobox domain
PfamPF000463.4E-16134188IPR001356Homeobox domain
CDDcd000862.45E-16134191No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PfamPF021831.8E-11190224IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.9E-27190233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGDKDDGLGL SLSLGCGQNQ PSSKLNFMFL ASNPLQNLQQ NKTWNRLCLS SDGHMDTGSF  60
LRGIDVNRAP AATVDCEEEG VGVSSPNSTI STISGKKNER DHVAEETEAE RDSCSRASDD  120
EDGGGSAGGG DASRKKLRLS KEQSMVLEET FKEHSTLNPK QKLALAKQLN LKPRQVEVWF  180
QNRRARTKLK QTEVDCEYLK RCCENLTEEN RRLHKEVQEL RALKLSPQLY MHMKPPTTLT  240
MCPSCERVAA PGSSAVKRCQ TSPDRQQPVP VNPWAAMPIT HQPFNAPASR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138SRKKLRL
2182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8484811e-158GQ848481.1 Gossypium arboreum cultivar FDH-171 homeodomain associated leucine zipper protein (HDZip) mRNA, complete cds.
GenBankHM6377451e-158HM637745.1 Gossypium arboreum cultivar FDH-171 homeodomain associated leucine zipper protein (HDZ) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709676.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_017639522.10.0PREDICTED: homeobox-leucine zipper protein HAT3
SwissprotP466021e-111HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0B0PIW80.0A0A0B0PIW8_GOSAR; Homeobox-leucine zipper HAT3-like protein
TrEMBLA0A1U8L4X90.0A0A1U8L4X9_GOSHI; homeobox-leucine zipper protein HAT3-like
STRINGGorai.008G107900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-92homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]