PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06086_BGI-A2_v1.0
Common NameF383_14290
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 442aa    MW: 49478.6 Da    PI: 6.7423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06086_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53261531128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 l+pGfrFhPtdeelv++yLk+kv++k++++ ++i+evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat++g
  Cotton_A_06086_BGI-A2_v1.0  26 LAPGFRFHPTDEELVSYYLKRKVTNKPVRF-NAIAEVDIYKHEPWDLSdkSRLKTRDQEWYFFSLLDKKYGNGGRMNRATNQG 107
                                 579************************999.89**************85348899999************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd+ev + +++l+g+kktLvf++grap+g +t+Wvmheyrl
  Cotton_A_06086_BGI-A2_v1.0 108 YWKATGKDREVRH-NDQLMGMKKTLVFHNGRAPDGLRTNWVMHEYRL 153
                                 *************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6123176IPR003441NAC domain
PROSITE profilePS5100557.76626175IPR003441NAC domain
PfamPF023651.2E-2728153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRGENSLAIV TAPSAAAETG GSATALAPGF RFHPTDEELV SYYLKRKVTN KPVRFNAIAE  60
VDIYKHEPWD LSDKSRLKTR DQEWYFFSLL DKKYGNGGRM NRATNQGYWK ATGKDREVRH  120
NDQLMGMKKT LVFHNGRAPD GLRTNWVMHE YRLVEEELER IGTLQGYVLC RVFHKNNIGP  180
PNGNRYAPFI EAEWDDGSAA LVPGIDIGDD GVASEKALVE SNGVQKSGFE QEIQNADEEA  240
PANDKVRREL PNERIYDCPP LPPGNSERLD NGPRLCLVNR EAPLPLIHYK RRRQNDSGPN  300
HANISENSTR TQDHCSSTTT AGTTTASPSS DTTTAVSALL EFSLMESIEP KKKKPHVPPP  360
IYETANLDSM VPPGCMKLIT DLQNEIRKIS AEREMLKLEM MSAQAMINIL QSKVDFLSKE  420
NEDLKRNNRE LRGGSVGSCS HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-462517716167NO APICAL MERISTEM PROTEIN
1ut4_B6e-462517716167NO APICAL MERISTEM PROTEIN
1ut7_A6e-462517716167NO APICAL MERISTEM PROTEIN
1ut7_B6e-462517716167NO APICAL MERISTEM PROTEIN
3swm_A6e-462517719170NAC domain-containing protein 19
3swm_B6e-462517719170NAC domain-containing protein 19
3swm_C6e-462517719170NAC domain-containing protein 19
3swm_D6e-462517719170NAC domain-containing protein 19
3swp_A6e-462517719170NAC domain-containing protein 19
3swp_B6e-462517719170NAC domain-containing protein 19
3swp_C6e-462517719170NAC domain-containing protein 19
3swp_D6e-462517719170NAC domain-containing protein 19
4dul_A6e-462517716167NAC domain-containing protein 19
4dul_B6e-462517716167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472460.0KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615663.10.0PREDICTED: uncharacterized protein LOC108460613
SwissprotQ9SQY01e-152NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A0B0PRN10.0A0A0B0PRN1_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.012G007000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-140NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]