PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06025_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 302aa    MW: 34329.3 Da    PI: 5.7481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06025_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.39.8e-26129190159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++Dg +WrKYGqK++ +s +prsY+rCt +   gC++ k+v+r ++dp++ eitY g+H+++
  Cotton_A_06025_BGI-A2_v1.0 129 MEDGQAWRKYGQKKILNSIHPRSYFRCTRKyeqGCRAMKQVQRLEDDPQMYEITYIGTHTCT 190
                                 58**************************988889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-25120190IPR003657WRKY domain
PROSITE profilePS5081120.094124187IPR003657WRKY domain
SuperFamilySSF1182901.83E-24126190IPR003657WRKY domain
SMARTSM007749.5E-36129191IPR003657WRKY domain
PfamPF031062.8E-24130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGTLSPWPET LSNNKKRVIQ QLVHGQECAT QLQILFHNPS EEGGRLSAEE ILVQNILTSF  60
NHTISALSCI DSSEVSQNQT TCNDDSPWCE DRRSEGCSES SKRPGSKDKR GCYKRKRDAE  120
AWTVVSATME DGQAWRKYGQ KKILNSIHPR SYFRCTRKYE QGCRAMKQVQ RLEDDPQMYE  180
ITYIGTHTCT DSFRAPQIIP DSESWESQMG SHFQIPTKHH HLNPAAFPSV KQEAKEAAAS  240
DITDMDCMVW KEIMGGGGGF EYSLEHGMGC DYGDCRAFQY EFLKPAEIEH DYHFDGSECL  300
MV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-26123189268OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697720.0KF669772.1 Gossypium hirsutum WRKY transcription factor 102 (WRKY102) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614650.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1U8PUN80.0A0A1U8PUN8_GOSHI; probable WRKY transcription factor 70
STRINGGorai.012G013900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-49WRKY DNA-binding protein 70