PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06006_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 159aa    MW: 17149.2 Da    PI: 6.244
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06006_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26057.63.7e-18328547100
                      DUF260  47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                 +++pe++r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ae++++++e
  Cotton_A_06006_BGI-A2_v1.0  32 EEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQSLQAEVHAVRAE 85 
                                 6889*********************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.505186IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-163283IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSSANGKKTY IESSRNPKYH NTMCSLQTVE AEEVPESQRA DAANSLVYEA NVRLRDPVYG  60
CMGAISALQH QVQSLQAEVH AVRAEILKYK YREANFIPSS LVALLSSGAV SVAAPPPPPQ  120
PPPPPPLPTT STSTSSMYTQ LTTAADYTTI SNENVSYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-193310158126LOB family transfactor Ramosa2.1
5ly0_B8e-193310158126LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5257651e-160HQ525765.1 Gossypium herbaceum clone NBRI_D_2250-1 simple sequence repeat marker, mRNA sequence.
GenBankHQ5279961e-160HQ527996.1 Gossypium herbaceum clone NBRI_D_2250-2 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614538.15e-86PREDICTED: LOB domain-containing protein 15-like
TrEMBLA0A0B0NU484e-82A0A0B0NU48_GOSAR; LOB domain-containing 15-like protein
STRINGGorai.012G015900.19e-64(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2780922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-30LOB domain-containing protein 13