PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05869_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 269aa    MW: 31188 Da    PI: 6.0288
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05869_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.32.7e-2017102286
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                 Wt+ e+l Li+a++e++ +l+rg+lk+++Weev+  +       +    +++ qC++k+e+l++ry+ ++++ ++      s 
  Cotton_A_05869_BGI-A2_v1.0  17 WTHPETLNLIQAYQEKWYSLQRGQLKANQWEEVAVTVatrcglFDDSAAKTALQCRHKMEKLRRRYRSERQNLGSA-----SP 94 
                                 *************************************999999889999*************************84.....57 PP

                    trihelix  79 cpyfdqle 86 
                                 +py+d +e
  Cotton_A_05869_BGI-A2_v1.0  95 WPYYDAME 102
                                 *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1916104No hitNo description
SMARTSM005951.2E-524109IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSYDPAPAAK KPQPLPWTHP ETLNLIQAYQ EKWYSLQRGQ LKANQWEEVA VTVATRCGLF  60
DDSAAKTALQ CRHKMEKLRR RYRSERQNLG SASPWPYYDA MESLEQGPLP ISARPLASIV  120
PNGHEAGNYY HNDDENNPIE EEEEDDEEHE GGNRFSKSRS INYILRRPRV ENRFAGRMKK  180
RVRTEEEGDG DGDAAITGKG EEDKGVELAM EIRRFAERFM RLERKKMEIM HETERLRMEM  240
ENKRIEMILD SEKKIVDAIS TSLGSKTKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430730.0AC243073.1 Gossypium arboreum clone GAH004E09-jgx, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649388.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A1U8N5830.0A0A1U8N583_GOSHI; trihelix transcription factor ASIL1-like
STRINGGorai.001G233700.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-62Trihelix family protein