PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05549_BGI-A2_v1.0
Common NameF383_02653
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 242aa    MW: 27218.9 Da    PI: 7.6323
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05549_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.42.4e-23483471
                     E2F_TDP  4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                                 +Lr+++ +   +++k e+ g +t+ eva+e+++e               ++kn rRR+YD+lNVL+a+++i++ ek+eirwkg
  Cotton_A_05549_BGI-A2_v1.0  4 GGLRQFSVM---VCKKLESkGSTTYAEVADEIIEEfaatqsntagsldefHEKNVRRRVYDALNVLMAMDIITR-EKKEIRWKG 83
                                589999999...****9999******************************999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.6E-24183IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094042.2E-861237IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.2E-36388IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.66E-18484IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.4E-20583IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440749.94E-3590229No hitNo description
SMARTSM011385.5E-3690224IPR014889Transcription factor DP, C-terminal
CDDcd144584.39E-3490192IPR014889Transcription factor DP, C-terminal
PfamPF087811.7E-2891209IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MPGGGLRQFS VMVCKKLESK GSTTYAEVAD EIIEEFAATQ SNTAGSLDEF HEKNVRRRVY  60
DALNVLMAMD IITREKKEIR WKGLSTTQTK DLEELKAAHV QLMTSISRKT AYLKDLEEQI  120
AGLRNIIKRN QRMLKSSNNS NNTAPKEGFT LPFILVQTSP HATVEIEISE DMQLVHLDFN  180
SLHDDAYILK LMHCYQQPEG INLSQSSSIH SSSSSCKASG GVSKPFYWNS ETDTVKQGTL  240
RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-28387992PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628367.11e-168PREDICTED: transcription factor-like protein DPA isoform X1
SwissprotQ9FNY39e-83DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A2P5XF201e-169A0A2P5XF20_GOSBA; Uncharacterized protein
STRINGGorai.007G375800.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.37e-83Transcription factor DP