PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_05313_BGI-A2_v1.0 | ||||||||
Common Name | F383_02425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 384aa MW: 44481.3 Da PI: 5.1286 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110 | 1.7e-34 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ Cotton_A_05313_BGI-A2_v1.0 14 FLTKTYEMVDDHSTDSIVSWSASNRSFIVWNPLEFARDLLPRFFKHNNFSSFIRQLNTYGFRKSDPEQ---------WEFAND 87 9********************999***************************************99988.........****** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkks 102 F +g+ +ll++i+r+k Cotton_A_05313_BGI-A2_v1.0 88 DFIRGQPHLLKNIHRRKP 105 ***************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-37 | 4 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.8E-35 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.7E-61 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MDDAQSSSSS LPPFLTKTYE MVDDHSTDSI VSWSASNRSF IVWNPLEFAR DLLPRFFKHN 60 NFSSFIRQLN TYGFRKSDPE QWEFANDDFI RGQPHLLKNI HRRKPVHSHS MQNLLGQGAS 120 PLTESERQSF RDEIERLKSE KMSLVLELKR HEEERQGFEM QMQILRERLQ TMERRQQSMV 180 SNVARALKRP GFPIDPTPQF EAHVRKRRLP RIAYLYDESR IEDNPNPDTA SMSNTDPFEQ 240 LESSMVFWEN AIHDFGRANV FDESTSCPES PSISSIQLNI ETQPKSPQID MNSEPSTVVT 300 PEPVTSTEQP APPPAGVNDG FWEQFLTENP GSTDTREVPP ERKDPDTRKD EDKPEGHSRF 360 WWNNMKNVNN LTEQMGHLTS AERT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-24 | 4 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-24 | 4 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-24 | 4 | 103 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR067413 | 0.0 | KR067413.1 Gossypium hirsutum HSF32 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612421.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Refseq | XP_017612422.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Swissprot | O49403 | 1e-129 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A0B0P8I5 | 0.0 | A0A0B0P8I5_GOSAR; Heat stress transcription factor A-4a-like protein | ||||
STRING | Gorai.010G240800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-119 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
---|---|---|---|
|