PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05104_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 881aa MW: 99381.3 Da PI: 6.5408

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05104_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.9	3.7e-14	63	136	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA+++GFs + + +++ k++g+i+ r+fvC +eg +++ +C a+++++++ +kw+v+k+++ Cotton_A_05104_BGI-A2_v1.0 63 FYDEYARRMGFSSKAGHFSSQyKTDGTIVAREFVCGREGLKRSA---------------ESCSAMIRIELK-GEKWVVIKFVK 129 9*************98888799***********98774...............47******.9****** PP FAR1 84 eHnHela 90 eH+H+++ Cotton_A_05104_BGI-A2_v1.0 130 EHSHSVV 136 **976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-10	63	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-26	275	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.016	553	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.4E-10	561	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-8	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDFHVIDSEG GLSHHGMSDD GDAEPSEGGE ANHVENSLAC EEDGISEPYV GMEFNSEDAA 60 RTFYDEYARR MGFSSKAGHF SSQYKTDGTI VAREFVCGRE GLKRSAESCS AMIRIELKGE 120 KWVVIKFVKE HSHSVVSSRK VHYLRPRRHF AGAAKTMADS YQGVGVVPSG MMYVSMDGNH 180 VSMDANNRGI RKTPPAEANC SGKNVGTLNY VLRPVNRKRT LGRDAQNLLD YFKKMQAENP 240 GFFYAIQLDE DNCMANVFWA DARSRTAYMH FGDAVKLDTS YRVNQYRVPF APFTGLNHHG 300 QVILFGCALL FDDSEASFVW LFKTFLTAMN DRRPVSLITD QDRAIQTAMS QVFPGVRHCI 360 NKWHVLREGP EKLTHIFHVH PNFQAELYNC INLTETIEEF ELSWSSIIEK YNLGAHDWLH 420 SLYNARAQWV PVYFRDSFFA AITPNQGFDG SFFDGFVNQQ TTLPIFFRQY ELAIENWFER 480 EIEADFDTIC TTPVLRTPSP MEKQAADLYT RKIFTKFQEE LVETFVYTAN RIEGDGAIST 540 FRVAKYEDVN KVYIVTLNYP EIRANCSCQM FEYSGILCRH ILTVFTVTNV LTLPPHYILK 600 RWTRNAKSGV GTDECGGDLH GQESLASRYN SLCREAIKYA EDGAIATETY NVAMAALNEV 660 GKKVSVVKKT VAKLASPDSL ATGAAYDDKK SSTSAPDTAP SLWPQQDETT RHFNLNDTGT 720 PAQSVSDLNL PRMAPVSLHR DDTHPDNMPV LPCLKSMRWL MENKNSKPGN RLAVIILKLQ 780 DYSNSPSAEM DVKFQLSRIT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETSTGESE 840 VKFQVSRDTL GAMLRSMAYI REQLSSVCEP QAEPLPKKHR K

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDFHVIDSEG GLSHHGMSDD GDAEPSEGGE ANHVENSLAC EEDGISEPYV GMEFNSEDAA  60
RTFYDEYARR MGFSSKAGHF SSQYKTDGTI VAREFVCGRE GLKRSAESCS AMIRIELKGE  120
KWVVIKFVKE HSHSVVSSRK VHYLRPRRHF AGAAKTMADS YQGVGVVPSG MMYVSMDGNH  180
VSMDANNRGI RKTPPAEANC SGKNVGTLNY VLRPVNRKRT LGRDAQNLLD YFKKMQAENP  240
GFFYAIQLDE DNCMANVFWA DARSRTAYMH FGDAVKLDTS YRVNQYRVPF APFTGLNHHG  300
QVILFGCALL FDDSEASFVW LFKTFLTAMN DRRPVSLITD QDRAIQTAMS QVFPGVRHCI  360
NKWHVLREGP EKLTHIFHVH PNFQAELYNC INLTETIEEF ELSWSSIIEK YNLGAHDWLH  420
SLYNARAQWV PVYFRDSFFA AITPNQGFDG SFFDGFVNQQ TTLPIFFRQY ELAIENWFER  480
EIEADFDTIC TTPVLRTPSP MEKQAADLYT RKIFTKFQEE LVETFVYTAN RIEGDGAIST  540
FRVAKYEDVN KVYIVTLNYP EIRANCSCQM FEYSGILCRH ILTVFTVTNV LTLPPHYILK  600
RWTRNAKSGV GTDECGGDLH GQESLASRYN SLCREAIKYA EDGAIATETY NVAMAALNEV  660
GKKVSVVKKT VAKLASPDSL ATGAAYDDKK SSTSAPDTAP SLWPQQDETT RHFNLNDTGT  720
PAQSVSDLNL PRMAPVSLHR DDTHPDNMPV LPCLKSMRWL MENKNSKPGN RLAVIILKLQ  780
DYSNSPSAEM DVKFQLSRIT LEPMLRSMAY ISEQLSTPAN RVAVINLKLQ DTETSTGESE  840
VKFQVSRDTL GAMLRSMAYI REQLSSVCEP QAEPLPKKHR K

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625959.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_017625960.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U8N2V4	0.0	A0A1U8N2V4_GOSHI; protein FAR1-RELATED SEQUENCE 3-like
STRING	Gorai.004G227400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]