PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04502_BGI-A2_v1.0
Common NameF383_10777
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 367aa    MW: 41390 Da    PI: 6.3267
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04502_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.9e-1176114442
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                                 +k +rr+++NReAAr+sR+RKka++++Le+   +L +  
  Cotton_A_04502_BGI-A2_v1.0  76 DKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLIQLE 114
                                 689**************************9665555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-772119No hitNo description
SMARTSM003383.6E-873136IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.87575119IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.77E-777120No hitNo description
PfamPF001701.2E-777107IPR004827Basic-leucine zipper domain
CDDcd147082.75E-2277129No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
PfamPF141442.1E-28167242IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNSPTPQFVP SRLGIYEPIH QIGIWGENFK SNGNPNTSTS VIVEVDNKLE NESETTSHEM  60
LTASNTYEQE ASKPIDKIQR RLAQNREAAR KSRLRKKAYV QQLENSRLKL IQLEQELQRA  120
RQQGLYMGGV LEGSHIGFSG TVNSEDSVGI AAFEMEYGRW VDVQHRQICE LRTTLNAHIS  180
DIELRILVES GIGHYFELFR MKSTVAKADV FYVISGVWKT SAERFFSWIG GFRPSELLKV  240
LVPQLDPLTE QQILEVCNLK QSCQQAEDAL SQGMEKLQET VSSTVAGGPV DEVSYIPQVA  300
TAMEKLEALV SFVNQADHLR QETLQQMSRI LTTRQAARGL LALGEYFHRL RALSTLWATR  360
PPEPSLP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742270.10.0PREDICTED: transcription factor TGA1-like isoform X1
RefseqXP_016742273.10.0PREDICTED: transcription factor TGA1-like isoform X4
RefseqXP_016742274.10.0PREDICTED: transcription factor TGA1-like isoform X4
RefseqXP_016742275.10.0PREDICTED: transcription factor TGA1-like isoform X4
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0B0PZL40.0A0A0B0PZL4_GOSAR; Transcription factor TGA1-like protein
STRINGGorai.007G243200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-177bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]