PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04430_BGI-A2_v1.0 | ||||||||
Common Name | F383_08065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 246aa MW: 28031.9 Da PI: 8.4698 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 91.6 | 1e-28 | 88 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++e Cotton_A_04430_BGI-A2_v1.0 88 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKE 168 ******************************************9988..99********************************* PP FAR1 85 HnHelap 91 H+H+l+p Cotton_A_04430_BGI-A2_v1.0 169 HTHPLMP 175 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-26 | 88 | 175 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLVLAVEFRV HGDGNGGMML NPVQAEASSS MENDNETGEN PVEGVFQPGL NEKLDRTSPQ 60 RDDIPEIVLA DEPYVGQEFE SEASAHAFYN AYATRVGFII RVSKLSRSRR DGSAIGRALV 120 CNKEGFRMPD KREKIMRHRA ETRVGCRAMI LVRKVSSGKW VVTKFVKEHT HPLMPGKGRT 180 DCIYDQNPNE HDKIRELTHQ LAIEKKRSAT YKRHLELIFE QIDEYNKSLS KKIQHIVDGV 240 REIENK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX579447 | 1e-114 | JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017632325.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like | ||||
TrEMBL | A0A0B0PQA5 | 0.0 | A0A0B0PQA5_GOSAR; Far1-related sequence 5-like protein | ||||
STRING | Gorai.005G016700.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-106 | FAR1 family protein |