PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04413_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 716aa MW: 82575.7 Da PI: 5.8424

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04413_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	70.1	4.2e-22	11	270	3	274
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl 83 +lLl+cA+a+++gdl+ a+alL + la ++ Rl++yf+ AL +r ++ + + y+++p ++ Cotton_A_04413_BGI-A2_v1.0 11 RLLLSCAKAIEDGDLKSADALLHIILVLADERPyLYESRLVKYFADALVRRAYGlHPASSYNTFPGNP--------------- 78 79************************9998867999************22222222222222............... PP GRAS 84 fsevsPilkfs....hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 P++ + + + I +a+ g++r+H iDf+i + + l++L + +++p +R+ + +p ++ e + Cotton_A_04413_BGI-A2_v1.0 79 ----APYYHYNgyriNDIIKKVIDDALMGNRRLHLIDFSIPYENFEGSVLRTLPTFSGDPLPVRVSYILPPFLKKYVESFSQM 157 ....33333330000333457888999999************************************8877555555555 PP GRAS 163 erLakfAeelgvpfe..fnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 e L+k A +l+v++e +v++a++l++++ +L++k+ +E+++V ++l +ll + ++e L +k+++P++v+ Cotton_A_04413_BGI-A2_v1.0 158 EFLTKDAMNLNVKLEaeLKVVYANSLAEVDEYKLDFKRrreDEMVVVYYKFKLDKLLTDGKAMER----ELVRLKEINPTIVI 236 78******997226678999********99999************88888888....8999****** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleak 274 + + ++h++++Fl+ + ++++yys + Cotton_A_04413_BGI-A2_v1.0 237 MLDFYSNHTHSNFLTCLEHSFQYYSNTCTFWCRF 270 **********************9865555333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.964	1	349	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-19	11	270	IPR005202	Transcription factor GRAS
PROSITE profile	PS50600	8.831	555	716	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Gene3D	G3DSA:3.30.310.130	5.3E-5	578	599	No hit	No description
Gene3D	G3DSA:3.30.310.130	5.3E-5	631	680	No hit	No description
SuperFamily	SSF54001	6.08E-8	637	715	No hit	No description
Pfam	PF02902	1.2E-5	638	714	IPR003653	Ulp1 protease family, C-terminal catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MASSISDTAL RLLLSCAKAI EDGDLKSADA LLHIILVLAD ERPYLYESRL VKYFADALVR 60 RAYGLHPASS YNTFPGNPAP YYHYNGYRIN DIIKKVIDDA LMGNRRLHLI DFSIPYENFE 120 GSVLRTLPTF SGDPLPVRVS YILPPFLKKY VESFSQMEFL TKDAMNLNVK LEAELKVVYA 180 NSLAEVDEYK LDFKRRREDE MVVVYYKFKL DKLLTDGKAM ERELVRLKEI NPTIVIMLDF 240 YSNHTHSNFL TCLEHSFQYY SNTCTFWCRF QSKSSASSTS STFSREVINS LIIEKAFESR 300 DGYHFEPSIT KLDLEYYPYA LVKNYNIDVV VAICLQNRHT SNEVYIVQFY WPPTESEISK 360 SLALRIFDDL KHMKTTFVSV KVQGTEIKFQ EEAISSIPTS SNTAMPLKIV EEARNIDAIE 420 INGHIEQVVA APFNTLEGPY NQDKRKRKME ENGTSTVKVF KNRNHEKASS NGDIASDFNK 480 NDGSLSFDNW MEPQCSSSES VGEKAEIMEA SVRNRDRLES SIGKPNHGRN IAASIEIPND 540 EPSFNSNQLD EFQSSSSESD DETTLREQGS WCREDVRTYL VSSFTNKEIK RLNRWKKSEL 600 SRKLIGRDKE FKLVGKKLKP LLMVPYCDET LIEYYIDDSL FLPMCLSAHW VLFCVDTREK 660 KISWLDPIPS SRIKSNNVEK QIILQWFTSY LLPEFGYNDA DEWPFVVRTD IPKQEK

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MASSISDTAL RLLLSCAKAI EDGDLKSADA LLHIILVLAD ERPYLYESRL VKYFADALVR  60
RAYGLHPASS YNTFPGNPAP YYHYNGYRIN DIIKKVIDDA LMGNRRLHLI DFSIPYENFE  120
GSVLRTLPTF SGDPLPVRVS YILPPFLKKY VESFSQMEFL TKDAMNLNVK LEAELKVVYA  180
NSLAEVDEYK LDFKRRREDE MVVVYYKFKL DKLLTDGKAM ERELVRLKEI NPTIVIMLDF  240
YSNHTHSNFL TCLEHSFQYY SNTCTFWCRF QSKSSASSTS STFSREVINS LIIEKAFESR  300
DGYHFEPSIT KLDLEYYPYA LVKNYNIDVV VAICLQNRHT SNEVYIVQFY WPPTESEISK  360
SLALRIFDDL KHMKTTFVSV KVQGTEIKFQ EEAISSIPTS SNTAMPLKIV EEARNIDAIE  420
INGHIEQVVA APFNTLEGPY NQDKRKRKME ENGTSTVKVF KNRNHEKASS NGDIASDFNK  480
NDGSLSFDNW MEPQCSSSES VGEKAEIMEA SVRNRDRLES SIGKPNHGRN IAASIEIPND  540
EPSFNSNQLD EFQSSSSESD DETTLREQGS WCREDVRTYL VSSFTNKEIK RLNRWKKSEL  600
SRKLIGRDKE FKLVGKKLKP LLMVPYCDET LIEYYIDDSL FLPMCLSAHW VLFCVDTREK  660
KISWLDPIPS SRIKSNNVEK QIILQWFTSY LLPEFGYNDA DEWPFVVRTD IPKQEK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	1e-44	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631939.1	1e-180	PREDICTED: uncharacterized protein LOC108474502 isoform X1
Refseq	XP_017631940.1	1e-180	PREDICTED: uncharacterized protein LOC108474502 isoform X2
STRING	Gorai.005G014100.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	5e-21	RGA-like 2