PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04406_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 659aa    MW: 76115.7 Da    PI: 5.0382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04406_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS108.96.9e-34153673374
                        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                 +lLl+cAea+++gdl+ a+++L+++  la ++      R+++yf+ AL +r ++  +  +    p + +++ + ++  +    
  Cotton_A_04406_BGI-A2_v1.0  15 SLLLSCAEAIEDGDLKSADKFLQNILILADERPyLDKSRVVKYFADALVRRAYGLLPAFSYYTFPVDPAPHYHYDRYRI---- 93 
                                 79**************************8888867899****************5555544333333333333333333.... PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                 + v  i ++ h  a  +  +a+ g++r+H iDf+i ++    + l++L + +++p  +R+  + +   ++  + ++  e L++
  Cotton_A_04406_BGI-A2_v1.0  94 NGV--IENVIH--AALMEKNALMGNRRLHLIDFSIPYPSFQNSVLHTLPTFSGDPLPVRVSYILPTFLKKYVKFSRQMEILTR 172
                                 333..233333..3333457999******************************************77778899999999**** PP

                        GRAS 168 fAeelgvpfe..fnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                                  Aee++v++e   +v++a++l++ +  e+++k+  +E+++V   ++l +++++  ++e      L  +k+++P++v++ +  +
  Cotton_A_04406_BGI-A2_v1.0 173 DAEEVNVKLEdeLKVVYANSLAEADEFEIDFKRreDEMVVVYYKFKLDKMVRDAKAMER----ELVRLKEINPTIVIMLDFYS 251
                                 *********6337888999***********99999****************98888888....8999**************** PP

                        GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                                 +h++++Fl+ f ++++y  + +d +++        + ++E+e   ++ +n+ a eg++ + rh tl +W++ +++aGF+ +pl
  Cotton_A_04406_BGI-A2_v1.0 252 NHTHSNFLTCFKDSFQYSLKTLDFWAQL-------ELFLEEE--YEWDCNIEAWEGNNVIRRHPTLTEWQHLFSMAGFSRIPL 325
                                 *************************877.......7899999..57789********************************** PP

                        GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +++ a +   l+ k++     + ee+++l+lg k+ p++++SaW+
  Cotton_A_04406_BGI-A2_v1.0 326 NHRKAID---LIDKFDRFVEIMGEEEECLILGYKECPMFFLSAWK 367
                                 9887665...666666222345699*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.6561350IPR005202Transcription factor GRAS
PfamPF035142.4E-3115367IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MASSFFDIDT DTALSLLLSC AEAIEDGDLK SADKFLQNIL ILADERPYLD KSRVVKYFAD  60
ALVRRAYGLL PAFSYYTFPV DPAPHYHYDR YRINGVIENV IHAALMEKNA LMGNRRLHLI  120
DFSIPYPSFQ NSVLHTLPTF SGDPLPVRVS YILPTFLKKY VKFSRQMEIL TRDAEEVNVK  180
LEDELKVVYA NSLAEADEFE IDFKRREDEM VVVYYKFKLD KMVRDAKAME RELVRLKEIN  240
PTIVIMLDFY SNHTHSNFLT CFKDSFQYSL KTLDFWAQLE LFLEEEYEWD CNIEAWEGNN  300
VIRRHPTLTE WQHLFSMAGF SRIPLNHRKA IDLIDKFDRF VEIMGEEEEC LILGYKECPM  360
FFLSAWKPNV EEEHLNFNSS NDKFGQGFNP YPSPLPPLQP FPEGLALNRV AVLAEIHDIL  420
NHLHCEHKFS SALTWASKVN NMNETISDPN KYTFSIQSNS CYLKDFKSHL FMHLCEDKIK  480
QTIIEKAIES KDGYHCEPSI TNLDGEDNPY PVDVKKYDID VVVAICLQNR YTNNDLYVVE  540
FYWPAIESET SKSLALRIFN DLTHMEKKFV TVKVEGAEKA ISNIPTSSDT ARPLKIAEET  600
EDVDAVEING VNVQRGVVST LPSQMPTHSS SKVVAAPFNT PEGPHNQMME KIMNPHKLW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837936e-40JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634157.10.0PREDICTED: uncharacterized protein LOC108476444
TrEMBLA0A1U8LHD00.0A0A1U8LHD0_GOSHI; uncharacterized protein LOC107927488 isoform X2
TrEMBLA0A1U8LHG10.0A0A1U8LHG1_GOSHI; uncharacterized protein LOC107927488 isoform X1
STRINGGorai.005G015100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8809420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-29GRAS family protein