PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04316_BGI-A2_v1.0
Common NameF383_24830
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 305aa    MW: 34562.2 Da    PI: 6.2846
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04316_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.43.3e-24132193159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +dDgy+WrKYGqK++  +++prsY+rCt++   gC++ k+v++ ++dp   e++Y g+H+++
  Cotton_A_04316_BGI-A2_v1.0 132 VDDGYAWRKYGQKQILHANHPRSYFRCTHKtdqGCQASKQVQKLEDDPPKYETIYYGHHTCK 193
                                 59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-25118194IPR003657WRKY domain
PROSITE profilePS5081120.621127190IPR003657WRKY domain
SuperFamilySSF1182907.45E-24128193IPR003657WRKY domain
SMARTSM007749.4E-36132194IPR003657WRKY domain
PfamPF031065.0E-24133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSWNTKKAIE ELVRGKELTK QLRDLLTKSL TDDGFVNSED LVLKICETFA NTLSLLTNSN  60
TTTTAAVADY YYNDDFNDVS QKPTINITSD GRKSEDSGDS IKSPPSTHRD RRGSYKRRKC  120
VDSRKKITSA LVDDGYAWRK YGQKQILHAN HPRSYFRCTH KTDQGCQASK QVQKLEDDPP  180
KYETIYYGHH TCKNMLKSCH FMVEDSTCNN DSSILLSFAN NSTLTNKQGN DNPFFSSVKQ  240
ESKEDYKPIS EITYNGSSSS EYLLSHHHQL STFDLSSADM TVLSPDHDVL SDVVDSVDLD  300
DLLQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22132193869OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310710.0KF031071.1 Gossypium hirsutum WRKY transcription factor 5 (WRKY5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633173.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0B0PAP40.0A0A0B0PAP4_GOSAR; Putative WRKY transcription factor 70-like protein
STRINGGorai.005G003900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-31WRKY DNA-binding protein 70