PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04044_BGI-A2_v1.0
Common NameF383_13291
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 305aa    MW: 34626.5 Da    PI: 5.1648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04044_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.71.4e-24128190159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 
                                 ++Dg++WrKYGqK++ +s++prsY+rC  +   gC+++k+v+r ++d+ +++++tY g+H+++
  Cotton_A_04044_BGI-A2_v1.0 128 VEDGHAWRKYGQKQILNSKHPRSYFRCPRKydqGCRATKQVQRLEDDGsQMFQTTYIGTHTCR 190
                                 58*************************9988889**********9997479**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-24120190IPR003657WRKY domain
PROSITE profilePS5081117.855123187IPR003657WRKY domain
SuperFamilySSF1182901.03E-22124190IPR003657WRKY domain
SMARTSM007745.5E-35128191IPR003657WRKY domain
PfamPF031061.3E-24129190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASVSAWPEG VPTSNKERVI EELVNGQECA KQLEILLHNW CEKNGRLSAE ELVHKIFASF  60
DHALSLLTAV ESAEDSQNQA TSYDDSPCCN GRSEDSTNSR KKLASKEKRG CYKRRRDEHA  120
WTVVSSTVED GHAWRKYGQK QILNSKHPRS YFRCPRKYDQ GCRATKQVQR LEDDGSQMFQ  180
TTYIGTHTCR PDSFKAPQII IDSEPPESYS KFSYGSSNPK MPTKKLHEIT PPVKQETKEE  240
TPTTSGLTDM DSVVMWKDII GAEYGDVASN VYTSTEITSQ NLELDLVIKP VEFEDDFQFD  300
ESEFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-23122190269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199115RKKLASKEKRGCYKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258690.0KJ825869.1 Gossypium hirsutum WRKY protein 27 (WRKY27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605171.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0B0NB790.0A0A0B0NB79_GOSAR; Putative WRKY transcription factor 70-like protein
STRINGGorai.009G292600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-43WRKY DNA-binding protein 70