PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_03825_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 268aa MW: 31288.2 Da PI: 6.3805 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.9 | 3.9e-16 | 21 | 102 | 2 | 82 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessst 78 Wt+qe+l Li+a++e++ +l+r+klk+ +W+ev + + +++ qC++k+e+l+ ry+ +++g ++ + Cotton_A_03825_BGI-A2_v1.0 21 WTHQETLNLIQAYQEKWYSLQRSKLKAWQWQEVVVTVavrcghLDDSPAKTALQCRHKMEKLRCRYRSERQGLASG-----AH 98 ********************************99988888888777789999**********************97.....46 PP trihelix 79 cpyf 82 +py+ Cotton_A_03825_BGI-A2_v1.0 99 WPYY 102 8888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.8E-15 | 20 | 103 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MSNISPVADP TPGKKSQPLP WTHQETLNLI QAYQEKWYSL QRSKLKAWQW QEVVVTVAVR 60 CGHLDDSPAK TALQCRHKME KLRCRYRSER QGLASGAHWP YYPISARPLA SLVPTRGLNC 120 YSENGHEAGN NYYSNYVVEE EQEDYYYDDE EENNQFSKSR SINNILRRPS AVNRFSGFLS 180 GKERIRGEED GDNDVAVVAM EEENKEMALA VEIRRFDEKL MWVERKRMEM MRETERLRME 240 MENTRIEMIL DANKKFVDVI SASFGSNK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012487775.1 | 1e-160 | PREDICTED: trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A2P5SFK2 | 1e-168 | A0A2P5SFK2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G154900.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24860.1 | 8e-38 | Trihelix family protein |