PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03457_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 171aa    MW: 19014.5 Da    PI: 8.8345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03457_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-095696954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                 r RR+ri ++f  L++++P       +K++ +++L +A++Y+k L
  Cotton_A_03457_BGI-A2_v1.0 56 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAIHYVKFL 96
                                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1484796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1352107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-1353100No hitNo description
Gene3DG3DSA:4.10.280.104.3E-1253103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-75696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDCFPSANFS SSFIDGSSSV TTTSNNSSSC SKEKKKAGKK GKGAVKLSTD PQSVAARERR  60
HRISDRFKIL QSMVPGGTKM DTVSMLDEAI HYVKFLKTQI WLHQAMINFV DDDSSSLFLP  120
TSFPVETNIY PSSTPTPNLE PRQPSQLLPL PDSCFQGPQQ TMPYDAYMRH Q
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2361130.0KP236113.1 Gossypium hirsutum ROX-like transcription factor (ROX) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614994.11e-125PREDICTED: transcription factor bHLH140-like
TrEMBLA0A2P5SFC42e-97A0A2P5SFC4_GOSBA; Uncharacterized protein
STRINGGorai.012G117300.16e-89(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152901418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-33APRATAXIN-like