PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03445_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 514aa    MW: 57764.4 Da    PI: 5.0577
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03445_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS137.81.2e-421415133374
                        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 +lL +  +a +++++ la+ +L  +se  +p g++++R+a+ + + ++++ +      y      ++s   s++   a+++f+
  Cotton_A_03445_BGI-A2_v1.0 141 HLLKAHGDATEKNQTDLAEVILRCVSEKGNPVGETLERIAFNLSQDIQNQNNY-----Y----LMQES---SKNFEVAFRTFY 211
                                 778888899999*****************************876666665544.....2....22333...45677889**** PP

                        GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                 +++P+ +++h++a +aIlea+ ++ e++Hi+Dfd++ G+QWp+L++a+a    +  +lR+T ++  + +s  + ++t++ L +
  Cotton_A_03445_BGI-A2_v1.0 212 QIFPYGRLAHFAATSAILEAIPNDaEQLHIVDFDLGVGIQWPSLIEAIAGHW-QHKTLRLTSIKLGNDHSPWRFQHTRRLLCD 293
                                 *********************99889***********************975.5589********9999************** PP

                        GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvksl........... 234
                                  A+++g++f+ + +    ++dl  e +++k+     +E la n+++ l ++ +   ++++  +e+L + k+l           
  Cotton_A_03445_BGI-A2_v1.0 294 HARSFGLNFKVEEI---GIHDLVNEFMAIKKqgggtKEWLAFNCMVGLPHMGK--NKSRKLVNEFLGIAKQLltscgdntrtt 371
                                 ************99...6677766666676667777**************983..3333445677777776633333222221 PP

                        GRAS 235 sPkvvvvveqe.....adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhet 311
                                 +  ++++ e +      d +++sF + f   l +y a ++s+e++++++  ++r  +E  ++g++i+                
  Cotton_A_03445_BGI-A2_v1.0 372 KRGIITLGEGDaceklKDGTGSSFGAYFNAQLMHYQATMESMESNMAKHLvQARLAMECLFVGPNICAQAW------------ 442
                                 5569999999854332344677***********************988878**************975544............ PP

                        GRAS 312 lekWrerleeaGF......kpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                                 ++kW+e+ e++ F      + +++s   +++ak ++++ + + y+v    ++ ++l+l W++ +Lv vS+Wr
  Cotton_A_03445_BGI-A2_v1.0 443 FQKWKEMNETCYFqagttlEGLKVSRGRVMEAKEMVKERE-NSYEVSiggDSGNELTLDWRGITLVKVSSWR 513
                                 445555544443311111156889999************9.44888877788999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.336113514IPR005202Transcription factor GRAS
PfamPF035144.0E-40141513IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MMQSQDFTPS WPLVNSTIDQ LEPYGFNMAV HFDAASSFHT SVDSFFSNEI LPFSPYDFDD  60
DLLRVTVPWE DISAPLAGLD SMLTDGVEES FPLSSQRQDV WSPCSSIRSS EASTDTMQSP  120
LTMPVLGEEA MAIDNQLPLF HLLKAHGDAT EKNQTDLAEV ILRCVSEKGN PVGETLERIA  180
FNLSQDIQNQ NNYYLMQESS KNFEVAFRTF YQIFPYGRLA HFAATSAILE AIPNDAEQLH  240
IVDFDLGVGI QWPSLIEAIA GHWQHKTLRL TSIKLGNDHS PWRFQHTRRL LCDHARSFGL  300
NFKVEEIGIH DLVNEFMAIK KQGGGTKEWL AFNCMVGLPH MGKNKSRKLV NEFLGIAKQL  360
LTSCGDNTRT TKRGIITLGE GDACEKLKDG TGSSFGAYFN AQLMHYQATM ESMESNMAKH  420
LVQARLAMEC LFVGPNICAQ AWFQKWKEMN ETCYFQAGTT LEGLKVSRGR VMEAKEMVKE  480
RENSYEVSIG GDSGNELTLD WRGITLVKVS SWRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1415751321375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613547.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P5WTJ40.0A0A2P5WTJ4_GOSBA; Uncharacterized protein
STRINGGorai.012G118000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.19e-21GRAS family protein