PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03364_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 206aa    MW: 22232.2 Da    PI: 7.3587
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03364_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.92e-39101101100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                                 +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vhk+FGasn  kll+ +p ++r da+ +l+yeA ar+rdPvyG++g+i++
  Cotton_A_03364_BGI-A2_v1.0  10 PCGACKFLRRKCVKGCVFAPYFDSDQgTAHFAAVHKVFGASNAAKLLQGTPVHKRVDAVFTLCYEALARVRDPVYGCAGHIFT 92 
                                 7***********************9989******************************************************* PP

                      DUF260  83 lqqqleqlkaelallkee 100
                                 lqqq+ +l+aela+++++
  Cotton_A_03364_BGI-A2_v1.0  93 LQQQVVNLQAELAYIQAR 110
                                 *************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7819111IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSAANNGTGP CGACKFLRRK CVKGCVFAPY FDSDQGTAHF AAVHKVFGAS NAAKLLQGTP  60
VHKRVDAVFT LCYEALARVR DPVYGCAGHI FTLQQQVVNL QAELAYIQAR LSTLQCLSLV  120
LPQSQAECRS TTTFHSASEL GSDLACSSDT SMNVFDLPQP QQTSIELAGS PNPFNRVTED  180
EDLQALAREF VSQCHPGVRF RPSTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-361011911119LOB family transfactor Ramosa2.1
5ly0_B4e-361011911119LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6154424e-60JX615442.1 Gossypium hirsutum clone NBRI_GE59429 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613527.11e-152PREDICTED: LOB domain-containing protein 19-like
SwissprotO813221e-65LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2P5W5T81e-150A0A2P5W5T8_GOSBA; Uncharacterized protein
STRINGGorai.008G114300.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-68LOB domain-containing protein 31