PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02500_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 271aa MW: 30695.6 Da PI: 8.7429

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02500_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.5e-31	12	66	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF +av+qLGG+++AtPk il++m+v+gLt++hvkSHLQk+R+ Cotton_A_02500_BGI-A2_v1.0 12 KERLRWTQELHDRFEQAVNQLGGPDRATPKGILKAMGVDGLTIYHVKSHLQKFRI 66 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.335	9	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-29	11	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.99E-18	11	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-25	12	66	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-9	14	64	IPR001005	SANT/Myb domain
Pfam	PF14379	8.2E-8	101	141	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MRRPSRADGL AKERLRWTQE LHDRFEQAVN QLGGPDRATP KGILKAMGVD GLTIYHVKSH 60 LQKFRILKFV PETNTSKLKQ PYLRGEIFQK YCLILVQHRA QLNEALQLYM EAQRKQGDDK 120 LQVRRNLKIK FEAQARYFER IAGEHRNRVT PTKATKSLSP ISLPSLCEES ESNSKDFETD 180 PEADKNEIES GERIQALKRA GIVEDNSASS SSSSSSSSMY ALPSSFSADG YEYDDQNMLL 240 NGGERLSYTA NDNSFPWNIP VCSSPLVPSF M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527636	1e-109	HQ527636.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IW7BW simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609200.1	1e-173	PREDICTED: myb family transcription factor PHL7-like
Refseq	XP_017609201.1	1e-173	PREDICTED: myb family transcription factor PHL7-like
TrEMBL	A0A1U8MF18	1e-169	A0A1U8MF18_GOSHI; protein PHR1-LIKE 1-like
STRING	Gorai.006G182800.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16802	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-38	G2-like family protein