PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02240_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 99aa MW: 11847.6 Da PI: 10.4722 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.9e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Cotton_A_02240_BGI-A2_v1.0 10 KGPWTEQEDAVLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-20 | 3 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.074 | 5 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.81E-22 | 11 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.60E-11 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 61 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MKAEQEETRK GPWTEQEDAV LVNFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKREKMSPQE QRLVLELHAK WGNRFHFTSP FNHHMISFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-15 | 10 | 85 | 4 | 78 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-15 | 10 | 85 | 58 | 132 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-15 | 10 | 85 | 58 | 132 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-15 | 10 | 85 | 4 | 78 | C-Myb DNA-Binding Domain |
1msf_C | 1e-15 | 10 | 85 | 4 | 78 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459143 | 3e-56 | AJ459143.1 Gossypium hirsutum partial myb115c gene, clone pGhMYB115c. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740582.1 | 8e-57 | PREDICTED: transcription factor MYB59-like isoform X1 | ||||
Refseq | XP_016755977.1 | 8e-57 | PREDICTED: transcription factor MYB59-like isoform X1 | ||||
Refseq | XP_017618648.1 | 9e-57 | PREDICTED: transcription factor MYB59 isoform X1 | ||||
Swissprot | Q4JL84 | 1e-50 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A0B0NST8 | 2e-55 | A0A0B0NST8_GOSAR; Transcription factor MYB48-like protein | ||||
TrEMBL | A0A1U8NNK8 | 2e-55 | A0A1U8NNK8_GOSHI; transcription factor MYB59-like isoform X1 | ||||
TrEMBL | A0A1U8PXV5 | 2e-55 | A0A1U8PXV5_GOSHI; transcription factor MYB59-like isoform X1 | ||||
TrEMBL | A0A2P5QNA2 | 2e-55 | A0A2P5QNA2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G136400.1 | 1e-53 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 5e-53 | myb domain protein 59 |
Publications ? help Back to Top | |||
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