PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02202_BGI-A2_v1.0
Common NameF383_11435
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 483aa    MW: 53446.3 Da    PI: 8.2165
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02202_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17154203155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cotton_A_02202_BGI-A2_v1.0 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                                 78*******************......55************************997 PP
2AP238.82.3e-12246293152
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                                 s+y+GV+ +k  grW+A+   +     +++++lg f+++ eAa+a+++a+ k
  Cotton_A_02202_BGI-A2_v1.0 246 SKYRGVTLHK-CGRWEARMGQF--L-GKRYIYLGLFDSEVEAARAYDKAAIK 293
                                 89********.7******5553..2.26**********99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15154211IPR016177DNA-binding domain
PfamPF008475.5E-9154203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-17155211IPR001471AP2/ERF domain
PROSITE profilePS5103217.899155211IPR001471AP2/ERF domain
CDDcd000183.87E-11155210No hitNo description
SMARTSM003803.4E-31155217IPR001471AP2/ERF domain
PfamPF008473.9E-8246293IPR001471AP2/ERF domain
CDDcd000181.72E-24246306No hitNo description
SuperFamilySSF541713.6E-16246306IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-15247305IPR001471AP2/ERF domain
SMARTSM003803.4E-30247310IPR001471AP2/ERF domain
PROSITE profilePS5103215.475247304IPR001471AP2/ERF domain
PRINTSPR003677.1E-6248259IPR001471AP2/ERF domain
PRINTSPR003677.1E-6286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MLDLNLNVAS PESTQGLDSA APFTDELNNE GSRNQMDESG TSNSSIVNED DESCSTRASG  60
QAFTLSFDIL KVGRKSRNHE AALVVTRELF PVKGIGADFG SSEAQSSGNS SNKSKWIDLS  120
FERKEAAAEP RVMQQQQPLQ TVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVDADINF SLCDYEDDMK QTKDLSKEEF VHVLRRQSTG  240
FSRGSSKYRG VTLHKCGRWE ARMGQFLGKR YIYLGLFDSE VEAARAYDKA AIKSNGREAV  300
TNFELSTYEG EMVFDTRNKG NGHNLDLNLG ISPPVSDGPK EKENAGHLQM NNGKSLRAEN  360
PAAATFSVPS FQGLAGTSDQ PIFWNSAYPR FFPSEERTMV KPVEFDPPQR VPDWPWQMHG  420
QVSTTLMPLF SHAASSGFSF SATPPPTTTA ILPSKPQNTT AVHSLCFAAS TTNAINTPQH  480
RQS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616590.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_017616591.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-123RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2P5WSQ80.0A0A2P5WSQ8_GOSBA; Uncharacterized protein
STRINGGorai.003G139800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-135related to AP2.7