PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02199_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 873aa MW: 98693.4 Da PI: 6.2858

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02199_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.1	3.4e-14	62	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +Y+eY +++GF+ ++ + ++sk++g+++ r+fvC k g ++++ ++ C+a+l+++++ +kw+vtk+++e Cotton_A_02199_BGI-A2_v1.0 62 YYDEYCRHMGFNSKVGQLSRSKTDGTVVAREFVCGKDGLKRRSADS--------------CDAMLRIELK-GDKWVVTKFVKE 129 8************************************9998877..............******.9******* PP FAR1 85 HnHela 90 H H+++ Cotton_A_02199_BGI-A2_v1.0 130 HRHSVT 135 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-10	62	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-26	274	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.165	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-10	560	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MDVHVIGPEE GMSHRGMTDD GDAEPSEGEL NHLNNSLAHD EDEISEPYLG MEFDSEGDAK 60 TYYDEYCRHM GFNSKVGQLS RSKTDGTVVA REFVCGKDGL KRRSADSCDA MLRIELKGDK 120 WVVTKFVKEH RHSVTSPSKV HYLRPRRHFA GAAKTMVDTC QGVGIVPSGV MYVSMDGNRV 180 SMDANTRGVR NTPPAEANRS TKNFGTLNYA VRPVTRKRTL GRDAQNLLDY FKKMQAENPG 240 FFYAIQLDDD NQMANAFWAD ARSRTAYTHF GDAVKLDTSY RVNQYRVPFA PFSGMNHHGQ 300 TILFGCALLL DDSEASFVWL FKTFFTAMND RQPVSLITNQ DRAIQTAVSQ VFPGVRHCIN 360 KWHILREGPE KLAHVCHVHP NFQVELYNCI NLTETIEEFE LSWSSLIEKY NLSAHDWLQS 420 LYSARAQWVP VYFRDSFFAA ISLNQGFDGS FFDGYVNQQT TIPMFFRQYE RAMENWFERE 480 IEADFDSICT TPVLRTPSPM EKQAADLYTR KIFTKFQEEL VETFVYTANR IDGDETISTF 540 RVAKFEDVNK AYMVTLNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKSGVG TDERGGELHG QVSLTARYNS LCREAIKYAE DGAIATETYN IAMGALKEGG 660 KKVFVVKKNV AKFAPPGSQA STAAYDDNSS STLGPDTAPL LWPQQDEITR HFNLNDTGAP 720 AQSVSDLNLP HMAPVSLHRD DSHPDNMPVL PCLKSMTWEM ENKNSMPGNR VAVINLKLQD 780 YGKNPSAEME VKFQLSRVTL EPMLRSMAYI SEQLSTPANR VAVINLKLQD SETTTGESEV 840 KFQVSRDTLG AMLRSMAYIQ EQLSNVVSIL FLY

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MDVHVIGPEE GMSHRGMTDD GDAEPSEGEL NHLNNSLAHD EDEISEPYLG MEFDSEGDAK  60
TYYDEYCRHM GFNSKVGQLS RSKTDGTVVA REFVCGKDGL KRRSADSCDA MLRIELKGDK  120
WVVTKFVKEH RHSVTSPSKV HYLRPRRHFA GAAKTMVDTC QGVGIVPSGV MYVSMDGNRV  180
SMDANTRGVR NTPPAEANRS TKNFGTLNYA VRPVTRKRTL GRDAQNLLDY FKKMQAENPG  240
FFYAIQLDDD NQMANAFWAD ARSRTAYTHF GDAVKLDTSY RVNQYRVPFA PFSGMNHHGQ  300
TILFGCALLL DDSEASFVWL FKTFFTAMND RQPVSLITNQ DRAIQTAVSQ VFPGVRHCIN  360
KWHILREGPE KLAHVCHVHP NFQVELYNCI NLTETIEEFE LSWSSLIEKY NLSAHDWLQS  420
LYSARAQWVP VYFRDSFFAA ISLNQGFDGS FFDGYVNQQT TIPMFFRQYE RAMENWFERE  480
IEADFDSICT TPVLRTPSPM EKQAADLYTR KIFTKFQEEL VETFVYTANR IDGDETISTF  540
RVAKFEDVNK AYMVTLNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKSGVG TDERGGELHG QVSLTARYNS LCREAIKYAE DGAIATETYN IAMGALKEGG  660
KKVFVVKKNV AKFAPPGSQA STAAYDDNSS STLGPDTAPL LWPQQDEITR HFNLNDTGAP  720
AQSVSDLNLP HMAPVSLHRD DSHPDNMPVL PCLKSMTWEM ENKNSMPGNR VAVINLKLQD  780
YGKNPSAEME VKFQLSRVTL EPMLRSMAYI SEQLSTPANR VAVINLKLQD SETTTGESEV  840
KFQVSRDTLG AMLRSMAYIQ EQLSNVVSIL FLY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017620247.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0D2QKG1	0.0	A0A0D2QKG1_GOSRA; Uncharacterized protein
STRING	Gorai.003G140100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]