PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02066_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 21789.5 Da PI: 4.448 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.7 | 8.1e-20 | 6 | 46 | 5 | 45 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +s qvtfskRrng++KKA+E++ LC+a++ +i+fs++gk Cotton_A_02066_BGI-A2_v1.0 6 KESSCQVTFSKRRNGLFKKASEICLLCGANIGIIVFSPKGK 46 56778**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.184 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-23 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-21 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-21 | 5 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-10 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-10 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKKLQKESSC QVTFSKRRNG LFKKASEICL LCGANIGIIV FSPKGKPFIF GHPNIETILD 60 RYFSGSLAMD DYENDSATTE TSLCFQELYD ECEEALEKLK EEKKRIEHTK EAMKNKGEFW 120 WDEAIDDNMG LEELEAYLKA IEELRNNAAR KANESMMCDV VADSGGYFDF GIAADAFNFD 180 HCPSQDFGAA GQL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635641.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1U8KZX1 | 1e-139 | A0A1U8KZX1_GOSHI; agamous-like MADS-box protein AGL61 | ||||
STRING | EOX97245 | 3e-64 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35437 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-34 | AGAMOUS-like 61 |