PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01937_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24572.1 Da    PI: 9.976
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01937_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.31e-2874124151
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                 krien +nrqvtfskRrng+lKKA+ELS+LCdaev ++ifss+gk+y ++s
  Cotton_A_01937_BGI-A2_v1.0  74 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVVLLIFSSSGKVYQFAS 124
                                 79***********************************************86 PP
2K-box39.62.1e-141241783488
                       K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                                 ++ hl Ged+  L +++L+qLe+qL+ +++++Rs+K +++ ++   l+++ k  +
  Cotton_A_01937_BGI-A2_v1.0 124 SHEHLSGEDILALGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRVKLKE 178
                                 689****************************************999999876444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4066125IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.54866126IPR002100Transcription factor, MADS-box
CDDcd002658.75E-3767124No hitNo description
SuperFamilySSF554559.16E-2967126IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-316888IPR002100Transcription factor, MADS-box
PROSITE patternPS00350068122IPR002100Transcription factor, MADS-box
PfamPF003196.2E-2675122IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-3188103IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-31103124IPR002100Transcription factor, MADS-box
PfamPF014862.2E-10124176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRSEGPHCTR ELRNIWNYER QSSSAVVSPE PSRSCLTQNT HKAIDNVLST VDTYAPMHDG  60
WVLKEMGRGK VQLKRIENPT NRQVTFSKRR NGLLKKAFEL SILCDAEVVL LIFSSSGKVY  120
QFASHEHLSG EDILALGMRD LKQLERQLKI GVERVRSRKR RIVSDHATLL KRRVKLKELQ  180
DGNISSGLVG ENACTMFHQR IVHEEDFHNE TGLPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-2066124159MEF2 CHIMERA
6byy_B2e-2066124159MEF2 CHIMERA
6byy_C2e-2066124159MEF2 CHIMERA
6byy_D2e-2066124159MEF2 CHIMERA
6bz1_A2e-2066124159MEF2 CHIMERA
6bz1_B2e-2066124159MEF2 CHIMERA
6bz1_C2e-2066124159MEF2 CHIMERA
6bz1_D2e-2066124159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364521e-108HM236452.1 Gossypium hirsutum MADS36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709012.13e-97PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EU393e-31MADS6_ORYSJ; MADS-box transcription factor 6
TrEMBLA0A1U8L2Z26e-96A0A1U8L2Z2_GOSHI; MADS-box transcription factor 23-like isoform X1
STRINGGorai.007G043400.17e-94(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.22e-34MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li H, et al.
    The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.
    Cell Res., 2010. 20(3): p. 299-313
    [PMID:20038961]
  3. Zhang J,Nallamilli BR,Mujahid H,Peng Z
    OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).
    Plant J., 2010. 64(4): p. 604-17
    [PMID:20822505]
  4. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  5. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  6. Yadav SR,Khanday I,Majhi BB,Veluthambi K,Vijayraghavan U
    Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility.
    Plant Cell Physiol., 2011. 52(12): p. 2123-35
    [PMID:22016342]
  7. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  8. Conrad LJ, et al.
    The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.
    Plant J., 2014. 80(5): p. 883-94
    [PMID:25279942]
  9. Zhang J, et al.
    Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice.
    J. Exp. Bot., 2015. 66(1): p. 99-112
    [PMID:25324400]
  10. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]
  11. Zhang B, et al.
    A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).
    PLoS Genet., 2016. 12(7): p. e1006152
    [PMID:27367609]