PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01866_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 200aa    MW: 23158.5 Da    PI: 9.8291
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01866_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181766150
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                k ien+  r ++fskRr gi KK +ELS+LC+ ev+ iifs++gk y ++
  Cotton_A_01866_BGI-A2_v1.0 17 KIIENEDDRLISFSKRRFGIYKKISELSTLCGSEVLFIIFSPKGKPYSFA 66
                                579******************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.717969IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-25968IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-241081IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-171131IPR002100Transcription factor, MADS-box
PfamPF003194.4E-211965IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MASSSKKTKG KQKIEIKIIE NEDDRLISFS KRRFGIYKKI SELSTLCGSE VLFIIFSPKG  60
KPYSFAHPSI ESVTKRFLNP NQPLHETTDA PVETYRKVRI KSLVQDYNEV CDQLDASKEK  120
QKEFSLAQQS RGSESHHWWK TPIYQLNPRE LHERDKRFTE FINLISIARD KKIVSISSMH  180
AAMDEDVPFV VPPRYGPSLQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609592.11e-147PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5YSG81e-146A0A2P5YSG8_GOSBA; Uncharacterized protein
STRINGGorai.006G132000.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-28AGAMOUS-like 57