PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01720_BGI-A2_v1.0

Common Name

F383_04683, F383_15617

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 680aa MW: 78094.9 Da PI: 7.8553

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01720_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.4	1.8e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevt 79 +fY+eYAk++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a l+++k + ++w+vt Cotton_A_01720_BGI-A2_v1.0 63 EFYSEYAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLNDSKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVT 145 6************9998877356667999**********9999******************9977779* PP FAR1 80 kleleHnHela 90 ++++HnHel Cotton_A_01720_BGI-A2_v1.0 146 GFVNHHNHELL 156 *******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-18	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-21	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	557	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	560	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MMSEDAGQML VMYDDPSDQR SLSLDETSST EESPDEARLS LETTADSVPY IGQRFATHDA 60 AYEFYSEYAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN DSKPQRNRKS 120 SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDADKNRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKSDQEDESI DLLRMCRNNK 240 DKDPNFKFEY TLDSNNRLDN IAWSYASSVQ SYEIYGDAVV FDTTHRLTVF DMPLGIWVGV 300 NNYGMPCFFG CVLLREENSR SFSWALKAFL GFMNGKAPQT ILTDQNMYLK EAIAIEMPST 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDFFGLHTN 420 RHIANLFALR TLWALPYLRS HFFAGMTTTG HSKAINSFIQ RFLSAQTRLA QFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFQMDD 540 GFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR HALRVLSTGN CFQIPDRYLP 600 LRWRRISTSP AKLHQSSSSD HMERIQLFQS MVSTLVTESA KSKERLDIAT EQVSILLSRI 660 REQPVASQGA RDISPIHRNL

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MMSEDAGQML VMYDDPSDQR SLSLDETSST EESPDEARLS LETTADSVPY IGQRFATHDA  60
AYEFYSEYAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN DSKPQRNRKS  120
SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDADKNRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKSDQEDESI DLLRMCRNNK  240
DKDPNFKFEY TLDSNNRLDN IAWSYASSVQ SYEIYGDAVV FDTTHRLTVF DMPLGIWVGV  300
NNYGMPCFFG CVLLREENSR SFSWALKAFL GFMNGKAPQT ILTDQNMYLK EAIAIEMPST  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVDFFGLHTN  420
RHIANLFALR TLWALPYLRS HFFAGMTTTG HSKAINSFIQ RFLSAQTRLA QFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFQMDD  540
GFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR HALRVLSTGN CFQIPDRYLP  600
LRWRRISTSP AKLHQSSSSD HMERIQLFQS MVSTLVTESA KSKERLDIAT EQVSILLSRI  660
REQPVASQGA RDISPIHRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612082.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_017612083.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_017612084.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0B0PVA0	0.0	A0A0B0PVA0_GOSAR; Far1-related sequence 11-like protein
STRING	Gorai.006G118900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]