PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01620_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 602aa    MW: 65837.7 Da    PI: 4.644
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01620_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.82.2e-1142356022374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                  ++Ll+cA+ +++++ e+a + La+l+e +s++gdp++R+a+yfteAL++rl++   ++ + l++ et+   s++ + ++k++
  Cotton_A_01620_BGI-A2_v1.0 235 LKALLDCAT-LADSEPERAIKSLAKLKESVSEHGDPTERVAFYFTEALHSRLSH---QTDQRLTMIETT---SEDFTLSYKAL 310
                                 689*****9.5667999999*********************************9...666677777777...89999****** PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetger 164
                                 ++++P+ kf+hltaNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+r
  Cotton_A_01620_BGI-A2_v1.0 311 NDACPYSKFAHLTANQAILEATDRASKIHIVDFGIVQGVQWAALLQALATRSAGKPtRIRISGIPAPVLGstPAPSLYATGNR 393
                                 ****************************************************77666*********998888999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L++fA+ l+++fef++ + + +++l+ +++rv+++E+laVn++lql++lld++ +  +   + L l ksl+Pk+v++ e ea+
  Cotton_A_01620_BGI-A2_v1.0 394 LRDFAKLLDLNFEFEP-ILTPVTELTGSSFRVDEDEVLAVNFMLQLYNLLDSTPAAVE---TALALAKSLNPKIVTLGEYEAS 472
                                 ****************.7999*****************************88888888...9********************* PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvpl 329
                                 +n+  Fl+rf +al+yysa+f+sle +lpr+s eri vE++llgr+i  v+  e+a  +rer+e +e+W+  +e +GF++v+l
  Cotton_A_01620_BGI-A2_v1.0 473 LNGVGFLNRFKNALRYYSAVFESLEPNLPRDSPERIQVEKHLLGRKIAGVIGPEEAGtQRERMEDKEQWKILMEISGFETVTL 555
                                 ****************************************************99887699*********************** PP

                        GRAS 330 sekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                 s++a +qak ll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  Cotton_A_01620_BGI-A2_v1.0 556 SHYAISQAKILLWNYNySPSYSLIESQPGFLsLAWNEVPLLTVSSWR 602
                                 ****************999***9999988888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.517208580IPR005202Transcription factor GRAS
PfamPF035147.6E-112235602IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAYMCADNGN LMAIAQQVIK QKQEQEQQQQ QQQQQQQQQQ LLGLNPFSLN PWSSTTHHGV  60
SSSGNVGYGL TGPGFTDPFQ GDAGEGFQFP NMEHHHSIGF RFPDFGGGAG GEFDSDEWMD  120
SLMNGGGHST DTSNLPSGCD AWQSNADFGI YGADPFTACP SRLTVTCSPP SNLNRVIPTT  180
TLPAWPPSPP PPPPQVTVEE TKTSSPQNQS QDPAINDGAG ISSGSPETDL SPPLLKALLD  240
CATLADSEPE RAIKSLAKLK ESVSEHGDPT ERVAFYFTEA LHSRLSHQTD QRLTMIETTS  300
EDFTLSYKAL NDACPYSKFA HLTANQAILE ATDRASKIHI VDFGIVQGVQ WAALLQALAT  360
RSAGKPTRIR ISGIPAPVLG STPAPSLYAT GNRLRDFAKL LDLNFEFEPI LTPVTELTGS  420
SFRVDEDEVL AVNFMLQLYN LLDSTPAAVE TALALAKSLN PKIVTLGEYE ASLNGVGFLN  480
RFKNALRYYS AVFESLEPNL PRDSPERIQV EKHLLGRKIA GVIGPEEAGT QRERMEDKEQ  540
WKILMEISGF ETVTLSHYAI SQAKILLWNY NYSPSYSLIE SQPGFLSLAW NEVPLLTVSS  600
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1492316021375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5255011e-111HQ525501.1 Gossypium herbaceum clone NBRI_D_EYT27PB02CZHKW simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614707.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_017614714.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0D2QLT30.0A0A0D2QLT3_GOSRA; Uncharacterized protein
STRINGGorai.003G015400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein