PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01582_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 284aa    MW: 31016.1 Da    PI: 6.7582
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01582_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702194.14.7e-60892224154
                      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsa 85 
                                  ++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqq+   + ++ ++  ++++skr+re        
  Cotton_A_01582_BGI-A2_v1.0  89 SGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQQLLVAPQQHQQFvRAEQSKRHRE-------- 163
                                 6789*********************************************88877654444333224555555554........ PP

                      DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                           +++ le  ++P+e+sseavfrcvrvs v+d+++++aYqtav+igGhvfkGiLy+qG+e+
  Cotton_A_01582_BGI-A2_v1.0 164 ----------NPTGLELGNFPAELSSEAVFRCVRVSNVEDADDQYAYQTAVNIGGHVFKGILYNQGPET 222
                                 ..........355678889************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.5E-6190221IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-2792134IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-27173220IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAGFFLRGQD QQDNSSPPTD QTENWFWCRN EDIPYKGFEL WQQQQQEQQQ QHIYMSGLGV  60
GGPSRGSSNF MMMTSGGGND GGGGGGNTSG ISCQDCGNQA KKDCPHMRCR TCCKSRGFDC  120
QTHVKSTWVP ASKRRERQQQ QLLVAPQQHQ QFVRAEQSKR HRENPTGLEL GNFPAELSSE  180
AVFRCVRVSN VEDADDQYAY QTAVNIGGHV FKGILYNQGP ETNYDMAAAV TTTTAGGVAT  240
TAATTASGGA SPSSTTPFID PSSLYPTLNT NFMAGTQFFP NPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6155500.0JX615550.1 Gossypium hirsutum clone NBRI_GE59584 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645926.10.0PREDICTED: protein SHI RELATED SEQUENCE 1
SwissprotQ9SD406e-79SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A1U8MGT51e-161A0A1U8MGT5_GOSHI; protein SHI RELATED SEQUENCE 1-like
STRINGGorai.003G011800.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2430234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-62Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]