PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01582_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 284aa MW: 31016.1 Da PI: 6.7582 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 194.1 | 4.7e-60 | 89 | 222 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsa 85 ++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqq+ + ++ ++ ++++skr+re Cotton_A_01582_BGI-A2_v1.0 89 SGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQQLLVAPQQHQQFvRAEQSKRHRE-------- 163 6789*********************************************88877654444333224555555554........ PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ le ++P+e+sseavfrcvrvs v+d+++++aYqtav+igGhvfkGiLy+qG+e+ Cotton_A_01582_BGI-A2_v1.0 164 ----------NPTGLELGNFPAELSSEAVFRCVRVSNVEDADDQYAYQTAVNIGGHVFKGILYNQGPET 222 ..........355678889************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.5E-61 | 90 | 221 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.0E-27 | 92 | 134 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.7E-27 | 173 | 220 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAGFFLRGQD QQDNSSPPTD QTENWFWCRN EDIPYKGFEL WQQQQQEQQQ QHIYMSGLGV 60 GGPSRGSSNF MMMTSGGGND GGGGGGNTSG ISCQDCGNQA KKDCPHMRCR TCCKSRGFDC 120 QTHVKSTWVP ASKRRERQQQ QLLVAPQQHQ QFVRAEQSKR HRENPTGLEL GNFPAELSSE 180 AVFRCVRVSN VEDADDQYAY QTAVNIGGHV FKGILYNQGP ETNYDMAAAV TTTTAGGVAT 240 TAATTASGGA SPSSTTPFID PSSLYPTLNT NFMAGTQFFP NPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615550 | 0.0 | JX615550.1 Gossypium hirsutum clone NBRI_GE59584 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645926.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9SD40 | 6e-79 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A1U8MGT5 | 1e-161 | A0A1U8MGT5_GOSHI; protein SHI RELATED SEQUENCE 1-like | ||||
STRING | Gorai.003G011800.1 | 1e-146 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24302 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-62 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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