PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01505_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 26288.7 Da PI: 7.2986 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.5 | 1.2e-44 | 11 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyW 83 pGfrFhPt+eelv++yLk+ + gk+l + ++i ++iy++ PwdLp ++k +e+ewyfF++rd++ + gk++nr+t++gyW Cotton_A_01505_BGI-A2_v1.0 11 LPGFRFHPTEEELVNYYLKETALGKNLYC-DIIGFLNIYNHYPWDLPGMAKIGEREWYFFVQRDTRGGHgGKKPNRTTERGYW 92 59************************999.99***************888999***********9998758899********* PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d+++ + + +gl+ktLvfy+g+ap+g++tdWvm+eyrl Cotton_A_01505_BGI-A2_v1.0 93 KATGSDRQIRRLtePKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 139 *********9874455569**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.609 | 10 | 157 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.85E-52 | 11 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-25 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEAIISPEIR LPGFRFHPTE EELVNYYLKE TALGKNLYCD IIGFLNIYNH YPWDLPGMAK 60 IGEREWYFFV QRDTRGGHGG KKPNRTTERG YWKATGSDRQ IRRLTEPKII MGLRKTLVFY 120 TGKAPNGNRT DWVMNEYRLS DTSILREDIV LCKIYRKATS LRVLEQRAEE HALSSYVAQN 180 NNITMPLPLQ HHDYGTDMVE ADSDEHGPSS YSAWTTMTEC FTHYGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-41 | 12 | 157 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847252 | 0.0 | KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645331.1 | 1e-172 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q10S65 | 6e-77 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A1U8KQZ1 | 1e-170 | A0A1U8KQZ1_GOSHI; NAC domain-containing protein 2-like | ||||
STRING | Gorai.003G003900.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3899 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-82 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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