PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01467_BGI-A2_v1.0
Common NameF383_02330
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 222aa    MW: 26005.2 Da    PI: 9.6211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01467_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18449147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  Cotton_A_01467_BGI-A2_v1.0  4 RGHWRPAEDEKLRELVERHGPHNWNAIAQKLQ-GRSGKSCRLRWFNQ 49
                                899*****************************.***********996 PP
2Myb_DNA-binding60.73.1e-195699146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                r ++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Cotton_A_01467_BGI-A2_v1.0 56 RSPFTEEEEERLLSAHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 99
                                789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.993150IPR017930Myb domain
SMARTSM007175.9E-15352IPR001005SANT/Myb domain
PfamPF002493.6E-18449IPR001005SANT/Myb domain
SuperFamilySSF466892.43E-30497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27557IPR009057Homeodomain-like
CDDcd001671.00E-13748No hitNo description
PROSITE profilePS5129426.2751105IPR017930Myb domain
SMARTSM007172.8E-1655103IPR001005SANT/Myb domain
PfamPF002492.9E-165698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2258104IPR009057Homeodomain-like
CDDcd001671.68E-125898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MCCRGHWRPA EDEKLRELVE RHGPHNWNAI AQKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEERLLSA HRIHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRQRSS LYAKTSHTTP  120
SKPLHHSQMG AGHGFLPLLH KYKQGFPHNT CSPLNPNHCV TTTQDKKEAI EFYDFLQVNT  180
DSNNKSEVTE NSRRDDEEVN QQEAMPLMEH HTKARPSFFN FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3321055108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636818.11e-168PREDICTED: transcriptional activator Myb-like
SwissprotQ6R0C42e-77MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A0B0NW291e-166A0A0B0NW29_GOSAR; Transcription factor MYB44-like protein
TrEMBLA0A1U8LYB41e-166A0A1U8LYB4_GOSHI; transcriptional activator Myb-like
TrEMBLA0A2P5X0831e-166A0A2P5X083_GOSBA; Uncharacterized protein
STRINGGorai.008G293100.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28182769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-80myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]