PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01342_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24421.2 Da PI: 6.5285 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 54 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ g+Wv+e+r+p +k+ r++lg+f ta++Aa+a++ a+ +l+g Cotton_A_01342_BGI-A2_v1.0 54 PVYRGVRRRN-PGKWVSEVREP---NKKSRIWLGTFPTADMAARAHDVAAIALRG 104 68*****887.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-12 | 54 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-31 | 55 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.247 | 55 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 55 | 114 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.3E-31 | 55 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 56 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.17E-29 | 56 | 114 | No hit | No description |
PRINTS | PR00367 | 1.3E-8 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDFVVQDYDM VDSGSVSESG TDRPVNFSDE YVMLASSYPK RRAGRKKFRE TRHPVYRGVR 60 RRNPGKWVSE VREPNKKSRI WLGTFPTADM AARAHDVAAI ALRGKSACLN FADSAWNLPV 120 PASSDPKDIQ KTAAEVAETF RTAEYSCGNS RNDAKRSENT EMEKGFYLDE EALFGTQRFW 180 ANMAAGMMMS PPRSGHDGGW EEHEVDDYVP LWSYSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 53 | 111 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ409060 | 0.0 | DQ409060.1 Gossypium hirsutum DREB1-like transcription factor (DREB1L) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636572.1 | 1e-161 | PREDICTED: dehydration-responsive element-binding protein 1D-like isoform X1 | ||||
Swissprot | Q9FJ93 | 2e-68 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | Q6VY01 | 1e-154 | Q6VY01_GOSHI; Putative dehydration responsive element binding protein GhDREB1A | ||||
STRING | Gorai.008G280600.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-60 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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