PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00932_BGI-A2_v1.0
Common NameF383_32220
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 249aa    MW: 28625.2 Da    PI: 8.3753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00932_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.5e-061521911155
                                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  Cotton_A_00932_BGI-A2_v1.0 152 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 191
                                 7999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.734141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.83E-5152195No hitNo description
SuperFamilySSF474591.1E-10152208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-8156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
FLVLGNTEAQ MPYLDVLMQM ESKGNVNGDA FSMEPKIFYN DNQIRDGAFA IPYQSHFNSN  60
FLQDYEYGSS NFDNNFQQSM SLSSKLAIPY LESESIQNGR KREIEFNNDP NTALDERNKN  120
KRKKLLTSFE QSHRSSQEIT EIKDFRLNMP VRRSQKLSDK ITALQKLVSP YGKTDTASVL  180
QEASLYIKLL QEQIQMLSSS YKSLRAIHPQ EIGKKQQDLK SRGLCLVPIS FTQRVTKEEQ  240
SSLENLNNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618634.10.0PREDICTED: transcription factor bHLH114-like isoform X2
TrEMBLA0A0B0MUS51e-180A0A0B0MUS5_GOSAR; Transcription factor protein
STRINGGorai.013G023000.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17246610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-22bHLH family protein