PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00487_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 297aa    MW: 32396.5 Da    PI: 7.9979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00487_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029196218123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++Cg  Fs+   L  H+r+H
  Cotton_A_00487_BGI-A2_v1.0 196 HECSICGAGFSSGQALGGHMRRH 218
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.81E-6128151No hitNo description
PfamPF139127.1E-10128153IPR007087Zinc finger, C2H2
SMARTSM003550.45129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576677.81E-6191218No hitNo description
Gene3DG3DSA:3.30.160.607.8E-4192218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-12195219IPR007087Zinc finger, C2H2
SMARTSM003550.017196218IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743196218IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDMMMMMMEG QDDDGVCCKD DDHQLQIIKG KRTKRPRAPP SSPPLTSVVA STTTTTTSSG  60
GGGGAVGVSP TITTSFDLAE SSTEEKEERE QDMANCLLLL SQGQTRKVKP PSPPPSEPST  120
AAAVETDVHQ CKTCNRCFPS FQALGGHRAS HKKFKVVNDQ DINNNHNKED HRHYDQFNEM  180
ATTLSLHITS KKPRVHECSI CGAGFSSGQA LGGHMRRHRT LTNAPTTKTP ATATTTLDTV  240
VRTSEQRKKP RTVLQLDLNL PAPEDDLHKE PNNKVLSFAS KGKLLVFSAS SLVDCHY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165670.0JX616567.1 Gossypium hirsutum clone NBRI_GE61324 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622121.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P5RTB51e-148A0A2P5RTB5_GOSBA; Uncharacterized protein
STRINGGorai.002G245800.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2427934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-37C2H2 family protein