PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00196_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 409aa    MW: 46642.8 Da    PI: 6.5346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00196_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-1763152299
                                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                 +k ++ps+v+   +l lpk+f     ++k e+++++lede+g++++vk+ ++k +    l++GW++F  a++L egD++vF+l
  Cotton_A_00196_BGI-A2_v1.0  63 IKYMLPSHVTGGFWLGLPKPFG-FDTLPK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRGFSIAHKLLEGDVCVFHL 139
                                 57899****************9.444554.6679***************555555....************************ PP

                                 -SSSEE..EEEEE-S CS
                          B3  85 dgrsefelvvkvfrk 99 
                                 ++ s+f  +v ++rk
  Cotton_A_00196_BGI-A2_v1.0 140 VRPSKF--KVYIVRK 152
                                 998999..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1955154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2357156IPR015300DNA-binding pseudobarrel domain
CDDcd100176.99E-2360151No hitNo description
PROSITE profilePS5086312.94362153IPR003340B3 DNA binding domain
SMARTSM010191.2E-1762153IPR003340B3 DNA binding domain
PfamPF023621.6E-1563152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTVNQVSLNI PFKLFSFKVV TKLNKRKRAK YDEVYENGET KLAVMERALD IQANLSSEFP  60
SMIKYMLPSH VTGGFWLGLP KPFGFDTLPK EDRMMVLEDE EGKEFQVKYL VEKIGLSGGW  120
RGFSIAHKLL EGDVCVFHLV RPSKFKVYIV RKKCSEEVDV ALGLLKLESS TQLVDNGKEL  180
KICEISVGKT EDRNDPILYS SNIEPTVDQS KNNRVDLGSE VSDGIRLSES IVDFREVKSF  240
EDFNILVNGL VIDSEFSKYL QMKYYELCCN QNSFLHENLL EGLNCKLVAG VIAETINIAD  300
AIRAAKLTTP HDSFLTWDKT LRSFEGLGMK VGFLRARLDK LMNLLTKSRR YKEAKLEQAN  360
SNEEKLKLEA KLAEVTHTLT KLDREIRLFK QENADDLEAL FREVANGPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642852.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2P5W3380.0A0A2P5W338_GOSBA; Uncharacterized protein
STRINGGorai.002G007600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-40B3 family protein