PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00174_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 242aa    MW: 27218.5 Da    PI: 7.5079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00174_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-19954147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg+W +eEdell ++v+++G+++W++I+  ++ gR++k+c++rw + 
  Cotton_A_00174_BGI-A2_v1.0  9 RGPWNPEEDELLRKLVQRYGPRNWTAISTSIP-GRSGKSCRLRWCNQ 54
                                89******************************.***********985 PP
2Myb_DNA-binding53.17.5e-1763105347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 ++T+eEd ++ +a+++ G++ W+tIar ++ gRt++ +k++w++ 
  Cotton_A_00174_BGI-A2_v1.0  63 AFTAEEDRIIRKAHALCGNK-WATIARLLN-GRTDNAVKNHWNST 105
                                 79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.005459IPR017930Myb domain
SuperFamilySSF466891.42E-306102IPR009057Homeodomain-like
SMARTSM007171.1E-16857IPR001005SANT/Myb domain
PfamPF002495.1E-19954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-251061IPR009057Homeodomain-like
CDDcd001672.82E-141153No hitNo description
SMARTSM007171.4E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129420.34761110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2162110IPR009057Homeodomain-like
PfamPF002494.0E-1463105IPR001005SANT/Myb domain
CDDcd001672.75E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGQDIDRVRG PWNPEEDELL RKLVQRYGPR NWTAISTSIP GRSGKSCRLR WCNQLSPEVE  60
HRAFTAEEDR IIRKAHALCG NKWATIARLL NGRTDNAVKN HWNSTLKRKF IEDSESEKKP  120
AKSPRTASSS SPSRSDANDL GLGVVADELT QCSRVSTKLT LRSSWNESVD LNNDDDHLSK  180
ENDLKLTAEK HENDSSATVA AAMLPPEILA AIKEMIKKEV RDYMEEFGFK SESVKNAIGN  240
IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-4081103105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-4081103105C-Myb DNA-Binding Domain
1msf_C2e-4081103105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641323.11e-179PREDICTED: transcription factor MYB44-like
SwissprotO231603e-64MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1U8M8V21e-176A0A1U8M8V2_GOSHI; transcription factor MYB44-like
STRINGGorai.002G009300.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2426934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-62myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]