PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna35171.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 11405 Da PI: 8.4882 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.8e-09 | 30 | 69 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++E++l+++ ++ G + W++Ia +++ gRt+ ++ +w mrna35171.1-v1.0-hybrid 30 MSEQEEDLIYRMYRLVGER-WDLIAGRIP-GRTAVELERFWI 69 589****************.*********.********9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.2E-5 | 26 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-5 | 30 | 68 | No hit | No description |
PROSITE profile | PS50090 | 6.017 | 31 | 68 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-9 | 31 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 31 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.85E-7 | 31 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MDKCRRKRPK ITTSDQSEEV VSNEWEFIHM SEQEEDLIYR MYRLVGERWD LIAGRIPGRT 60 AVELERFWIM RHSDMFAEKR NRYNKENSKT VLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna35171.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308008.1 | 2e-64 | PREDICTED: MYB-like transcription factor ETC3 | ||||
Swissprot | Q8GV05 | 6e-32 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A2P6SNR2 | 4e-52 | A0A2P6SNR2_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004308008.1 | 8e-64 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3583 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 3e-34 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna35171.1-v1.0-hybrid |