PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna35011.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 449aa    MW: 51483.2 Da    PI: 5.1556
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna35011.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.82.4e-4151381128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 
                              lp+G+rF+Pt+eelv+++Lkkk++g++  e++++i+ +d+y++eP +Lp     +++ ++ ew+fF++++ ky++++r+nr+tk+g
  mrna35011.1-v1.0-hybrid   5 LPVGYRFRPTEEELVNHFLKKKIRGENeSEINQIIPFIDLYEHEPAELPGllgsETEDHDMEWFFFTRNAYKYNKSRRSNRSTKKG 90 
                              799**********************995667778***************546555555677************************* PP

                      NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +Wk tgk++ ++++ +++++g k+tL+fy+gr +  +ktdWv hey l
  mrna35011.1-v1.0-hybrid  91 FWKITGKERGIKARrSKAVIGKKRTLTFYQGRGKAKKKTDWVFHEYYL 138
                              ************98566679**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-443162IPR003441NAC domain
PROSITE profilePS5100548.3145162IPR003441NAC domain
PfamPF023652.3E-236137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MPLSLPVGYR FRPTEEELVN HFLKKKIRGE NESEINQIIP FIDLYEHEPA ELPGLLGSET  60
EDHDMEWFFF TRNAYKYNKS RRSNRSTKKG FWKITGKERG IKARRSKAVI GKKRTLTFYQ  120
GRGKAKKKTD WVFHEYYLPQ NQVVSCSKKE KGDFVLCRLK NKSDKKDSSV RNEGEPGRGD  180
DEMNQEGDGE FLFHQPQTID DCCSSALWSP ASQELEAVLQ TNGDCHELQS PFGESESCLL  240
HRNQVLTCDE DESVYDVYPQ LRDPPDENLD SLLRAFQPQD YCPPILQSPI YTKLGNVTHP  300
LQPQNYQPSV IFQSPIYTKQ GNGPDANLHY GIPVVDIPVR HVMSNIENQA SDYRSLEVPR  360
PQTEVNLESA VYRFQPQDST LQPLMYTDFG DALHNIECNE LQSFFGDDHS SFGNIAYQDY  420
YSSDQTAQTP FKDSCRNHWE GSTMGIVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-25316413170Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna35011.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308269.10.0PREDICTED: NAC domain-containing protein 89-like
TrEMBLA0A2P6SIX20.0A0A2P6SIX2_ROSCH; Putative transcription factor NAM family
STRINGXP_004308269.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.13e-40NAC domain containing protein 96