PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna32456.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 324aa MW: 37155.9 Da PI: 9.9311

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna32456.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	67	128	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 rr+R+t+t+eq+ +L+e+++ ++p+a++++ + +l +++ ++V++WFqN Ra+e++ mrna32456.1-v1.0-hybrid 67 RRSRWTPTPEQVMALKEMYRCgLKTPTAKQIQLVTVQLrnygRIEGKNVFYWFQNYRARERQ 128 89****************99************************************97 PP
2	Wus_type_Homeobox	103.1	1.9e-33	68	130	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtpeQ++ L+e+y++Gl+tP++++iq +t +L++yG+ie+kNVfyWFQN +aRerqk+ mrna32456.1-v1.0-hybrid 68 RSRWTPTPEQVMALKEMYRCGLKTPTAKQIQLVTVQLRNYGRIEGKNVFYWFQNYRARERQKR 130 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-8	48	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.143	64	129	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-11	65	135	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-4	66	133	IPR001356	Homeobox domain
Pfam	PF00046	6.0E-16	67	128	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MNITRDQLPD YYIKAAANLH QPAVLLTPKL TSTSMVRGTS TSTAQGRSSS SGSFCIDKKS 60 EAAAPLRRSR WTPTPEQVMA LKEMYRCGLK TPTAKQIQLV TVQLRNYGRI EGKNVFYWFQ 120 NYRARERQKR RRQVMSMYKS TDSKQQQTFT NNTTSGLQDK ESAGGLTNQS SLEVEQQISL 180 EVEQQNKWKL PNRTVISDQE SSSVLQERMM SMVDCSSRQL VEQMATRRST SDATLIHRKL 240 LDYRHCYHHD YGRMVLTEPT NYRREEESRE TQTLELFPLK SDNLRGAKDT KVPLSRTTST 300 DNTADLIADD IISFFERFKA AYN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna32456.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011463852.1	0.0	PREDICTED: WUSCHEL-related homeobox 3B-like
TrEMBL	A0A2P6PTZ0	7e-94	A0A2P6PTZ0_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004298470.1	3e-76	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF33805	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	3e-23	WOX family protein

Link Out ? help Back to Top
Phytozome	mrna32456.1-v1.0-hybrid