PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32370.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 1148aa    MW: 123285 Da    PI: 7.9715
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32370.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.91.1e-357628761110
                      TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssss 81 
                              aa+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++      +     s
  mrna32370.1-v1.0-hybrid 762 AAVRRTSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtLKIPTTPS 847
                              5899*************************************************************888885544444333333333 PP

                      TCP  82 asnsssgkaaksaakskksqksaasalnl 110
                              +++++++++ +saa +k+++ s++++ +l
  mrna32370.1-v1.0-hybrid 848 NHHNTAEDSPTSAAAKKRKRPSNSEFVDL 876
                              33333345555555444444444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.47.107.2E-9755336IPR016039Thiolase-like
CDDcd008275.41E-7855439No hitNo description
SuperFamilySSF539011.36E-2789243IPR016039Thiolase-like
TIGRFAMsTIGR018333.7E-20690520IPR010122Hydroxymethylglutaryl-CoA synthase, eukaryotic
PfamPF011541.3E-7290245IPR013528Hydroxymethylglutaryl-coenzyme A synthase, N-terminal
PROSITE patternPS012260176191IPR000590Hydroxymethylglutaryl-coenzyme A synthase, active site
PfamPF085403.3E-111246520IPR013746Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain
SuperFamilySSF539013.09E-65246333IPR016039Thiolase-like
SuperFamilySSF539013.09E-65371518IPR016039Thiolase-like
Gene3DG3DSA:3.40.47.103.8E-4390441IPR016039Thiolase-like
PfamPF036342.1E-28767845IPR005333Transcription factor, TCP
PROSITE profilePS5136926.003769823IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0004421Molecular Functionhydroxymethylglutaryl-CoA synthase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 1148 aa     Download sequence    Send to blast
MWDKPKSSHQ VLNLKGHGDA LCHRDMRNGQ ESLFQLTESK RAFGSLDFAG DMAKNVGILA  60
VDIYFPLAAS SRSSSRSVSA IEEFEFGAII VVEALEAHDG ASKGKYTIGL GQDCMAFCSE  120
VEDVISMSLT VVTNLLEKYG VDPKQIGRLE VGSETVIDKS KSIKTFLMQI FEKHGNTDIE  180
GVDSTNACYG GTAALFNCVN WVESSSWDGR YGLVVCTDSA VYAEGPARPT GGAAAIAMLI  240
GPDAPIAFES KIRGSHMSHV YDFYKPDLAS EYPVVDGKLS QTCYLMALDS CYKQLCKKYE  300
KIEGKQFSIS DAEYFVFHSP YNKLVQKSFA RLVFQDSLRN ACSIDEAAKE KFAPFASLSS  360
DESYASRDLE KVAQQVAKPL YDAKVQPTTL VPKQVGNMYT ASLYAAFASL LHNKHDSLDG  420
KRVILFSYGS GSTATMFSLQ LRAGQHPFSL KNIAAVMNVG EKLESRHEFA PEKFCEIMKI  480
MEHRYGGKDF VTNKDISLLL PGTFYLTEVD SKYRRFYAQK DCAENGVVAN GIRTKRLLLW  540
MLNGSIGVED HSLKLKIVNV NRPHFWAGDI GINLEYAPSA QPRPHHQNAA QKAFPSRPFG  600
RAPPPCPLSG PRPIGTHDTN PQPHNAHPTR PPSEHTRGPN LHRVIFSLFS LLCPTPHITS  660
GGPAKMTSYF EDQEDDGGGG GSDRSTSTGD PEENRNSEGN RNGAFTRQLA GFHETAALQG  720
TPLKMEPFDS DPPSDSDHRA HLKLPRAPPS VGMVPLAAMQ PAAVRRTSTK DRHTKVEGRG  780
RRIRIPATCA ARIFQLTREL GHKSDGETVR WLLEHAEQAI IEATGTGTVP AIAVSVGGTL  840
KIPTTPSNHH NTAEDSPTSA AAKKRKRPSN SEFVDLSDAV SQSSGLAPLG PSAPQPVPQG  900
LVPVWAVGNA GGMMVPANAF WMIPPNGSGQ VVSAAAAGPS SQPPQIWALS PTLTPVFNMA  960
AARPISTFVA NGGGVEIRAP SPALSNSAVS TSTVGSKAAK KSSSTMAPSV SSSGSGVAAH  1020
ESTRRPRQPV MVEVAKVSES EGEGERRILD PPHIGVLSEP TAPKSTSRLN TPRQLELFIC  1080
VVGTRLVSGW IGRGPIKDVM PVEGGPELKL SMAGVGPTEM EGTKIVLHPP SSSSFISSTT  1140
IQAGPSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2f82_A0.0535201450HMG-CoA synthase
2f9a_A0.05352014503-Hydroxy-3-methylglutaryl coenzyme A synthase 1
2fa0_A0.0535201450HMG-CoA synthase
2fa3_A0.0535201450HMG-CoA synthase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32370.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF364322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.15e-61TCP family protein