PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna32171.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 21159.5 Da PI: 10.0145 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 15 | 66 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.kapskK.lsKaeiLekAveYIksL 54 + +Er+RR +++ ++L +++P+ + + +sk ++ + L +A YIk+L mrna32171.1-v1.0-hybrid 15 KTVERNRRIQMKGLCFKLASMVPPqYFkSSKSKEmMTQQSQLDLAASYIKQL 66 679*********************55586677778****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.33E-5 | 7 | 71 | No hit | No description |
PROSITE profile | PS50888 | 10.22 | 9 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-10 | 13 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-9 | 13 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-6 | 15 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MKKCTSETSS KLDRKTVERN RRIQMKGLCF KLASMVPPQY FKSSKSKEMM TQQSQLDLAA 60 SYIKQLTERI ENLKERKEKE LKSQSGTSNK SSITNVDRAN NKAVVVGSRL PIIKMSESGP 120 SIEVMLISGL NKNFMFYEVI SVLQEEGAEV VSANFSTVGD KIFHTLHAQV TDYYFFALLK 180 LFPSPDI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna32171.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298935.1 | 1e-121 | PREDICTED: transcription factor bHLH100-like | ||||
TrEMBL | A0A2P6P5W2 | 1e-107 | A0A2P6P5W2_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004298935.1 | 1e-121 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 8e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna32171.1-v1.0-hybrid |