PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32076.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 356aa    MW: 40088.4 Da    PI: 4.7121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32076.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.2e-28131191259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+r++edp+++eitY+g+H+++
  mrna32076.1-v1.0-hybrid 131 EDGHSWRKYGQKDILGAKYPRSYYRCTFRntqSCWATKQVQRADEDPTIFEITYKGKHTCS 191
                              7**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-28127191IPR003657WRKY domain
SMARTSM007742.8E-38130192IPR003657WRKY domain
SuperFamilySSF1182901.44E-24130192IPR003657WRKY domain
PROSITE profilePS5081121.448131188IPR003657WRKY domain
PfamPF031062.7E-26131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDTASKSWEQ KSLVGEIIEG MELAQQLRLS LNATSASSEN REFLVQRILT SYEKALLLLQ  60
LSGSPQTSQS AVLQDFRMSA NTSPCGDDYN HMSFKDHQDL QEISKKRKSM AKWTDHVIRV  120
SSENGIEGSQ EDGHSWRKYG QKDILGAKYP RSYYRCTFRN TQSCWATKQV QRADEDPTIF  180
EITYKGKHTC SHGSNSVPPP PSPEQQEQKR HKRENVSEPQ QSQVTQMSFP TNLRVDTENL  240
EDKEMMESPF SFTSTSFGCM PSGDDFLSSM FDNENFFGNF SQPLLSPAAG ESNYYLAPPS  300
QMRNIAVNEQ LSGSDLTEII SATNSRTNSP IPDMDFPLDL VELDPNFPFD TPGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-19131190968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32076.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774325e-39GQ377432.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298890.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1S5SLA60.0A0A1S5SLA6_FRAVE; WRKY transcription factor 27
STRINGXP_004298890.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-53WRKY family protein